org.biopax.paxtools.pattern.miner.ChemicalAffectsThroughControlMiner Maven / Gradle / Ivy

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package org.biopax.paxtools.pattern.miner;

import org.biopax.paxtools.pattern.Pattern;
import org.biopax.paxtools.pattern.PatternBox;

/**
 * Miner for the chemical-affects-protein pattern.
 * @author Ozgun Babur
 */
public class ChemicalAffectsThroughControlMiner extends AbstractSIFMiner
{
	/**
	 * Constructor that sets name and description.
	 */
	public ChemicalAffectsThroughControlMiner()
	{
		super(SIFEnum.CHEMICAL_AFFECTS, "-through-control", "In this case, chemical is " +
			"controlling a reaction of which the protein is a participant.");
	}

	/**
	 * Constructs the pattern.
	 * @return pattern
	 */
	@Override
	public Pattern constructPattern()
	{
		return PatternBox.chemicalAffectsProteinThroughControl();
	}

	@Override
	public String getSourceLabel()
	{
		return "controller SMR";
	}

	@Override
	public String getTargetLabel()
	{
		return "affected ER";
	}

	@Override
	public String[] getMediatorLabels()
	{
		return new String[]{"Control", "Interaction"};
	}

	@Override
	public String[] getSourcePELabels()
	{
		return new String[]{"controller simple PE", "controller PE"};
	}

	@Override
	public String[] getTargetPELabels()
	{
		return new String[]{"affected PE", "affected simple PE"};
	}
}