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    Download pattern JAR 5.2.1 with all dependencies


    BioPAX Pattern Search library. Also, converts BioPAX model to SIF (simple binary interactions) text format.

    Files of the artifact pattern version 5.2.1 from the group org.biopax.paxtools.

    Test

    Download pattern (5.2.1)
    Artifact pattern
    Group org.biopax.paxtools
    Version 5.2.1
    Last update 06. August 2023
    Organization not specified
    URL https://biopax.github.io/Paxtools
    License not specified
    Dependencies amount 2
    Dependencies paxtools-core, normalizer,
    There are maybe transitive dependencies!
    There is a newer version: 6.0.0
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    Source code of pattern version 5.2.1

    META-INF
    META-INF.META-INF.MANIFEST.MF
    META-INF.maven.org.biopax.paxtools.pattern
    META-INF.maven.org.biopax.paxtools.pattern.META-INF.maven.org.biopax.paxtools.pattern.pom.properties
    META-INF.maven.org.biopax.paxtools.pattern.META-INF.maven.org.biopax.paxtools.pattern.pom.xml
    org.biopax.paxtools.pattern
    org.biopax.paxtools.pattern.org.biopax.paxtools.pattern.Constraint
    org.biopax.paxtools.pattern.org.biopax.paxtools.pattern.MappedConst
    org.biopax.paxtools.pattern.org.biopax.paxtools.pattern.Match
    org.biopax.paxtools.pattern.org.biopax.paxtools.pattern.Pattern
    org.biopax.paxtools.pattern.org.biopax.paxtools.pattern.PatternBox
    org.biopax.paxtools.pattern.org.biopax.paxtools.pattern.Searcher
    org.biopax.paxtools.pattern.constraint
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.AND
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ActivityConstraint
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ActivityModificationChangeConstraint
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ConBox
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ConstraintAdapter
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ConstraintChain
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ControlToControllerER
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ControlsNotParticipant
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ConversionSide
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.Empty
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.Equality
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.Field
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.FieldOfMultiple
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.HasAnID
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.IDConstraint
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.InterToPartER
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.LinkedPE
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ModificationChangeConstraint
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.MultiPathConstraint
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.NOT
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.NonUbique
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.OR
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.PEChainsIntersect
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.Participant
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.ParticipatesInConv
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.PathConstraint
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.RelatedControl
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.SelfOrThis
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.Size
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.Type
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.XOR
    org.biopax.paxtools.pattern.constraint.org.biopax.paxtools.pattern.constraint.package.html
    org.biopax.paxtools.pattern.example
    org.biopax.paxtools.pattern.example.org.biopax.paxtools.pattern.example.DeltaFeatureExtractor
    org.biopax.paxtools.pattern.miner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.AbstractSIFMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.BlacklistGenerator
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.BlacklistGenerator2
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.BlacklistGenerator3
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.CSCOBothControllerAndParticipantMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.CSCOButIsParticipantMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.CSCOThroughBindingSmallMoleculeMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.CSCOThroughControllingSmallMoleculeMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.CSCOThroughDegradationMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.CatalysisPrecedesMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ChemicalAffectsThroughBindingMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ChemicalAffectsThroughControlMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.CommonIDFetcher
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ConfigurableIDFetcher
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ConsumptionControlledByMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ControlsDegradationIndirectMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ControlsExpressionMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ControlsExpressionWithConvMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ControlsPhosphorylationMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ControlsProductionOfMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ControlsStateChangeDetailedMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ControlsStateChangeOfMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ControlsTransportMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ControlsTransportOfChemicalMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.CustomFormat
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.Dialog
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.DirectedRelationMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ExtendedSIFWriter
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.IDFetcher
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.InComplexWithMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.InteractsWithMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.Miner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.MinerAdapter
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.NeighborOfMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.OutputColumn
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.ReactsWithMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.RelatedGenesOfInteractionsMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.SIFEnum
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.SIFInteraction
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.SIFMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.SIFSearcher
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.SIFToText
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.SIFType
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.SimpleIDFetcher
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.UbiquitousIDMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.UsedToProduceMiner
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.blacklist-names.txt
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.package.html
    org.biopax.paxtools.pattern.miner.org.biopax.paxtools.pattern.miner.sif-guide.html
    org.biopax.paxtools.pattern
    org.biopax.paxtools.pattern.org.biopax.paxtools.pattern.package.html
    org.biopax.paxtools.pattern.util
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.AdjacencyMatrix
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.Blacklist
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.ChemicalNameNormalizer
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.DifferentialModificationUtil
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.HGNC
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.PhysicalEntityChain
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.ProgressWatcher
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.RelType
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.hgnc.txt
    org.biopax.paxtools.pattern.util.org.biopax.paxtools.pattern.util.package.html




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