org.biopax.paxtools.search.Searcher Maven / Gradle / Ivy

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package org.biopax.paxtools.search;


import org.biopax.paxtools.model.BioPAXElement;

public interface Searcher {
	/**
	* Full-text search for BioPAX elements.
	* 
    * @param query String (keywords or Lucene query string)
	* @param page hits page number (when the number of hits exceeds a threshold)
	* @param filterByType - class filter
	* @param datasources  - filter by datasource
	* @param organisms - filter by organism
	* @return a bean that contains the list of BioPAX objects (hits) and annotations.
    */
	SearchResult search(String query, int page,
  		Class filterByType, String[] datasources, String[] organisms);

}