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BioPAX Semantic Rules and Best Practices validation

Files of the artifact biopax-validator version 4.0.0 from the group org.biopax.validator.

Artifact biopax-validator
Group org.biopax.validator
Version 4.0.0
Last update 14. September 2018
Tags: practices validation semantic best biopax rules
Organization not specified
URL https://biopax.github.io/validator
License not specified
Dependencies amount 9
Dependencies paxtools-core, normalizer, validator-core, spring-context-support, spring-oxm, commons-lang3, commons-text, spring-aop, spring-aspects,
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Source code of biopax-validator version 4.0.0

META-INF

META-INF.META-INF.MANIFEST.MF

META-INF.META-INF.aop.xml

META-INF.spring

META-INF.spring.META-INF.spring.appContext-loadTimeWeaving.xml

META-INF.spring.META-INF.spring.appContext-validator.xml

.codes.properties

.html-result.xsl

.log4j.properties

.obo.properties

org.biopax.validator.impl

org.biopax.validator.impl.org.biopax.validator.impl.AbstractCardinalityAndRangeRule

org.biopax.validator.impl.org.biopax.validator.impl.AbstractCvRule

org.biopax.validator.impl.org.biopax.validator.impl.CardinalityAndRangeRule

org.biopax.validator.impl.org.biopax.validator.impl.CvTermsRule

org.biopax.validator.impl.org.biopax.validator.impl.ExceptionsAspect

org.biopax.validator.impl.org.biopax.validator.impl.IdentifierImpl

org.biopax.validator.impl.org.biopax.validator.impl.ValidatorImpl

org.biopax.validator.rules

org.biopax.validator.rules.org.biopax.validator.rules.AcyclicComplexRule

org.biopax.validator.rules.org.biopax.validator.rules.BindingFeatureBindsToCRRule

org.biopax.validator.rules.org.biopax.validator.rules.BindingFeatureExtraRules

org.biopax.validator.rules.org.biopax.validator.rules.BindingFeatureSymmetricRule

org.biopax.validator.rules.org.biopax.validator.rules.BioSourceCellTypeCRRule

org.biopax.validator.rules.org.biopax.validator.rules.BioSourceCellTypeCvRule

org.biopax.validator.rules.org.biopax.validator.rules.BioSourceTaxonXrefCRRule

org.biopax.validator.rules.org.biopax.validator.rules.BioSourceTissueCRRule

org.biopax.validator.rules.org.biopax.validator.rules.BioSourceTissueCvRule

org.biopax.validator.rules.org.biopax.validator.rules.BiochemReactParticipantsLocationRule

org.biopax.validator.rules.org.biopax.validator.rules.BiochemicalPathwayStepAndCatalysisDirectionRule

org.biopax.validator.rules.org.biopax.validator.rules.BiopaxElementIdLengthRule

org.biopax.validator.rules.org.biopax.validator.rules.BiopaxElementIdRule

org.biopax.validator.rules.org.biopax.validator.rules.CatalysisControllerCRRule

org.biopax.validator.rules.org.biopax.validator.rules.CatalysisDirectionCRRule

org.biopax.validator.rules.org.biopax.validator.rules.CellularLocationCvRule

org.biopax.validator.rules.org.biopax.validator.rules.ClonedUtilityClassRule

org.biopax.validator.rules.org.biopax.validator.rules.ComplexAssemblyHasComplexParticipantRule

org.biopax.validator.rules.org.biopax.validator.rules.ComplexComponentsMultipleLocationRule

org.biopax.validator.rules.org.biopax.validator.rules.ComplexComponentsSameLocationRule

org.biopax.validator.rules.org.biopax.validator.rules.ComplexTwoOrMoreParticipantsRule

org.biopax.validator.rules.org.biopax.validator.rules.ControlTypeRule

org.biopax.validator.rules.org.biopax.validator.rules.ControlledVocabularyTermCRRule

org.biopax.validator.rules.org.biopax.validator.rules.ControlledVocabularyXrefCRRule

org.biopax.validator.rules.org.biopax.validator.rules.ConversionDirectionCRRule

org.biopax.validator.rules.org.biopax.validator.rules.ConversionToComplexAssemblyRule

org.biopax.validator.rules.org.biopax.validator.rules.DanglingElementRule

org.biopax.validator.rules.org.biopax.validator.rules.DataPropertyIllegalValueRule

org.biopax.validator.rules.org.biopax.validator.rules.DegradationConversionDirectionRule

org.biopax.validator.rules.org.biopax.validator.rules.DisplayNameRule

org.biopax.validator.rules.org.biopax.validator.rules.DnaEntityReferenceCRRule

org.biopax.validator.rules.org.biopax.validator.rules.DnaEntityReferenceRule

org.biopax.validator.rules.org.biopax.validator.rules.DnaRegionEntityReferenceCRRule

org.biopax.validator.rules.org.biopax.validator.rules.DnaRegionEntityReferenceRule

org.biopax.validator.rules.org.biopax.validator.rules.DnaRegionReferenceAbsoluteRegionCRRule

org.biopax.validator.rules.org.biopax.validator.rules.DuplicateIdCaseInsensitiveRule

org.biopax.validator.rules.org.biopax.validator.rules.EmptyModelRule

org.biopax.validator.rules.org.biopax.validator.rules.EntityFeatureInverseFunctionalRule

org.biopax.validator.rules.org.biopax.validator.rules.EntityReferenceSamePhysicalEntitiesRule

org.biopax.validator.rules.org.biopax.validator.rules.EntityReferenceTypeCRRule

org.biopax.validator.rules.org.biopax.validator.rules.EntityReferenceXrefRule

org.biopax.validator.rules.org.biopax.validator.rules.EvidenceCodeCvRule

org.biopax.validator.rules.org.biopax.validator.rules.EvidencePropertiesUsageRule

org.biopax.validator.rules.org.biopax.validator.rules.ExperimentalFormDescriptionCRRule

org.biopax.validator.rules.org.biopax.validator.rules.ExperimentalFormDescriptionCvRule

org.biopax.validator.rules.org.biopax.validator.rules.GeneOrganismCRRule

org.biopax.validator.rules.org.biopax.validator.rules.GenericEntityReferenceXrefRule

org.biopax.validator.rules.org.biopax.validator.rules.GenericProteinReferenceOrganismRule

org.biopax.validator.rules.org.biopax.validator.rules.GeneticInteractionParticipantCRRule

org.biopax.validator.rules.org.biopax.validator.rules.GeneticInteractionPhenotypeCRRule

org.biopax.validator.rules.org.biopax.validator.rules.GeneticInteractionTypeCRRule

org.biopax.validator.rules.org.biopax.validator.rules.InteractionParticipantsLocationRule

org.biopax.validator.rules.org.biopax.validator.rules.InteractionTypeCvRule

org.biopax.validator.rules.org.biopax.validator.rules.ModificationFeatureLocationCRRule

org.biopax.validator.rules.org.biopax.validator.rules.ModificationTypeCRRule

org.biopax.validator.rules.org.biopax.validator.rules.ModulationControllerCRRule

org.biopax.validator.rules.org.biopax.validator.rules.NextStepShareParticipantsRule

org.biopax.validator.rules.org.biopax.validator.rules.NotAdvisedInstancesRule

org.biopax.validator.rules.org.biopax.validator.rules.NotAllowedInstancesRule

org.biopax.validator.rules.org.biopax.validator.rules.NucleicAcidModificationFeatureCvRule

org.biopax.validator.rules.org.biopax.validator.rules.PathwayMultiOrganismRule

org.biopax.validator.rules.org.biopax.validator.rules.PathwayOrganismCRRule

org.biopax.validator.rules.org.biopax.validator.rules.PathwayStepProcessesArePathwayComponents

org.biopax.validator.rules.org.biopax.validator.rules.PhenotypeCvRule

org.biopax.validator.rules.org.biopax.validator.rules.PhysicalEntityAmbiguousFeatureRule

org.biopax.validator.rules.org.biopax.validator.rules.PhysicalEntityCellularLocationCRRule

org.biopax.validator.rules.org.biopax.validator.rules.ProteinEntityReferenceCRRule

org.biopax.validator.rules.org.biopax.validator.rules.ProteinEntityReferenceRule

org.biopax.validator.rules.org.biopax.validator.rules.ProteinModificationFeatureCvRule

org.biopax.validator.rules.org.biopax.validator.rules.ProteinReferenceOrganismRule

org.biopax.validator.rules.org.biopax.validator.rules.RelationshipTypeCvRule

org.biopax.validator.rules.org.biopax.validator.rules.RnaEntityReferenceCRRule

org.biopax.validator.rules.org.biopax.validator.rules.RnaEntityReferenceRule

org.biopax.validator.rules.org.biopax.validator.rules.RnaRegionEntityReferenceCRRule

org.biopax.validator.rules.org.biopax.validator.rules.RnaRegionEntityReferenceRule

org.biopax.validator.rules.org.biopax.validator.rules.RnaRegionReferenceAbsoluteRegionCRRule

org.biopax.validator.rules.org.biopax.validator.rules.SameLeftRightRule

org.biopax.validator.rules.org.biopax.validator.rules.SameNameDiffKindPhysEntitiesRule

org.biopax.validator.rules.org.biopax.validator.rules.ScoreSourceCRRule

org.biopax.validator.rules.org.biopax.validator.rules.SequenceIntervalBeginCRRule

org.biopax.validator.rules.org.biopax.validator.rules.SequenceIntervalEndCRRule

org.biopax.validator.rules.org.biopax.validator.rules.SequenceRegionCvRule

org.biopax.validator.rules.org.biopax.validator.rules.SharedUnificationXrefRule

org.biopax.validator.rules.org.biopax.validator.rules.SimplePhysicalEntityConversionRule

org.biopax.validator.rules.org.biopax.validator.rules.SimplePhysicalEntityFeaturesRule

org.biopax.validator.rules.org.biopax.validator.rules.SmallMoleculeEntityReferenceCRRule

org.biopax.validator.rules.org.biopax.validator.rules.SmallMoleculeEntityReferenceRule

org.biopax.validator.rules.org.biopax.validator.rules.SmrStructureCRRule

org.biopax.validator.rules.org.biopax.validator.rules.StoichiometricCoefficientCRRule

org.biopax.validator.rules.org.biopax.validator.rules.StoichiometryPhysicalEntityCRRule

org.biopax.validator.rules.org.biopax.validator.rules.TemplateReactionRegulationControllerCRRule

org.biopax.validator.rules.org.biopax.validator.rules.UnificationXrefDbCRRule

org.biopax.validator.rules.org.biopax.validator.rules.UnificationXrefIdCRRule

org.biopax.validator.rules.org.biopax.validator.rules.UnificationXrefLimitedRule

org.biopax.validator.rules.org.biopax.validator.rules.XrefDbCRRule

org.biopax.validator.rules.org.biopax.validator.rules.XrefIdCRRule

org.biopax.validator.rules.org.biopax.validator.rules.XrefRule

org.biopax.validator.rules.org.biopax.validator.rules.XrefSynonymDbRule

org.biopax.validator.utils

org.biopax.validator.utils.org.biopax.validator.utils.BiopaxOntologyManager

org.biopax.validator.utils.org.biopax.validator.utils.Cluster

org.biopax.validator.utils.org.biopax.validator.utils.XrefHelper

.profiles.properties

.rules.properties

.so-xp-simple.obo

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