org.broadinstitute.hellbender.tools.readersplitters.ReaderSplitter Maven / Gradle / Ivy
The newest version!
package org.broadinstitute.hellbender.tools.readersplitters;
import htsjdk.samtools.SAMFileHeader;
import org.broadinstitute.hellbender.utils.read.GATKRead;
import java.util.List;
/**
* Splits a reader by some value.
* @param Type of the value that will be split by.
*/
public abstract class ReaderSplitter {
/**
* Returns the values from the header that will be used to split the reader.
* @param header The header of the reader.
* @return The list of possibly values from the header for this splitter.
*/
public abstract List getSplitsBy(final SAMFileHeader header);
/**
* Returns the value from this record for this splitter.
* @param record The record.
* @param header Header for the record
* @return The value from the record for this splitter.
*/
public abstract T getSplitBy(final GATKRead record, final SAMFileHeader header);
}
© 2015 - 2025 Weber Informatics LLC | Privacy Policy