org.broadinstitute.hellbender.utils.io.HardThresholdingOutputStream Maven / Gradle / Ivy
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package org.broadinstitute.hellbender.utils.io;
import org.apache.commons.io.output.ThresholdingOutputStream;
import java.io.IOException;
/**
* An output stream which stops at the threshold
* instead of potentially triggering early.
*/
public abstract class HardThresholdingOutputStream extends ThresholdingOutputStream {
protected HardThresholdingOutputStream(int threshold) {
super(threshold);
}
@Override
public void write(byte[] b) throws IOException {
write(b, 0, b.length);
}
@Override
public void write(byte[] b, int off, int len) throws IOException {
int remaining = this.getThreshold() - (int)this.getByteCount();
if (!isThresholdExceeded() && len > remaining) {
super.write(b, off, remaining);
super.write(b, off + remaining, len - remaining);
} else {
super.write(b, off, len);
}
}
}
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