org.broadinstitute.hellbender.utils.variant.GATKVariant Maven / Gradle / Ivy
The newest version!
package org.broadinstitute.hellbender.utils.variant;
import htsjdk.samtools.util.Locatable;
/**
* Variant is (currently) a minimal variant interface needed by the Hellbender pipeline.
* This will be expanded as more methods are needed.
* NOTE: getStart() and getEnd() are 1-base inclusive (which matches the current GATK tools).
* This does not match the GA4GH spec.
*/
public interface GATKVariant extends Locatable {
boolean isSnp();
boolean isIndel();
}
© 2015 - 2025 Weber Informatics LLC | Privacy Policy