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package org.broadinstitute.hellbender.utils.variant;

/**
 * Homo sapiens genome constants.
 *
 * NOTE: reference to these constants is an indication that your code is (human) species assumption dependant.
 *
 * @author Valentin Ruano-Rubio <[email protected]>
 */
public final class HomoSapiensConstants {
    private HomoSapiensConstants(){}

    /**
     * Standard heterozygous rate for SNP variation.
     */
    public static final double SNP_HETEROZYGOSITY = 1e-3;

    /**
     * Standard heterozygous rate for INDEL variation.
     */
    public static final double INDEL_HETEROZYGOSITY = 1.0/8000;

    /**
     * Standard ploidy for autosomal chromosomes.
     */
    public static final int DEFAULT_PLOIDY = 2;
}