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• FeatureMapperV16.java

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org.campagnelab.dl.somatic.mappers.FeatureMapperV16 Maven / Gradle / Ivy

package org.campagnelab.dl.somatic.mappers;

import org.campagnelab.dl.framework.iterators.ConcatFeatureMapper;

/**
 * Same as V13, but with FractionDifferences4 instead of 3., to avoid division by zero when sum to counts is 0
 * in one sample.
 */
public class FeatureMapperV16 extends ConcatFeatureMapper {
    public FeatureMapperV16() {
        super(new SimpleFeatureCalculator(true), new IndelFeatures(),
                new ReadIndexFeatures(), new FractionDifferences4(), new MagnitudeFeatures2()
        );
    }
}