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• PositiveControlFeatureMapper.java

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org.campagnelab.dl.somatic.mappers.PositiveControlFeatureMapper Maven / Gradle / Ivy

package org.campagnelab.dl.somatic.mappers;

import org.campagnelab.dl.framework.mappers.NoMaskFeatureMapper;
import org.campagnelab.dl.varanalysis.protobuf.BaseInformationRecords;
import org.nd4j.linalg.api.ndarray.INDArray;

/**
 * The FeatureMapper to test for the second iteration.
 * Created by fac2003 on 5/24/16.
 */
public class PositiveControlFeatureMapper extends NoMaskFeatureMapper {

    @Override
    public int numberOfFeatures() {
        return 2;
    }

    @Override
    public void prepareToNormalize(BaseInformationRecords.BaseInformationOrBuilder record, int indexOfRecord) {

    }

    @Override
    public void mapFeatures(BaseInformationRecords.BaseInformationOrBuilder record, INDArray inputs, int indexOfRecord) {
       for (int i=0;i