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org.clulab.assembly.grammars.intersentential.yml Maven / Gradle / Ivy

taxonomy: org/clulab/reach/biogrammar/taxonomy.yml

# vars for assembly sieve
vars:
  # < operator should be outside of regex
  after_type: "Event"
  # "after" should be some kind of Event that transforms "before"
  before_type: "Event"

# Inter-sentence precedence expressions
rules:
  # Time expressions that are dependencies of the 'after' event
  - name: timex-after1
    example: "later"
    label: TimexAfter
    type: token
    pattern: |
      then | next | later | subsequently | consequently | ultimately | finally

  # Events at the beginning of sentences (so that we can know its relation spans sentences)
  - name: sentence-initial-event1
    example: "AFT is then phosphorylated."
    label: SentenceInitialEvent
    type: token
    pattern: |
      ^ @event:Event

  - name: inter-after1
    example: "A is phosphorylated by B. As a downstream effect, [C is ...]"
    label: InterAfter
    type: token
    pattern: |
      ^
      (?
      As a downstream effect |
      Later |
      In response |
      Ultimately |
      As a result |
      Then |
      Following (this | that) |
      Afterwards |
      Subsequently |
      Consequently |
      Eventually)
      ","?
      @after:Event

  - name: inter-after2
    example: "A is phosphorylated by B. [C is then ...]"
    label: InterAfter
    pattern: |
      when:TimexAfter
      after:SentenceInitialEvent = 
      Prior to (this | that) |
      Previously |
      Beforehand |
      Before this |
      For this)
      ","?
      @before:Event