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Download phenol-annotations JAR 2.1.1 with all dependencies

phenol-annotation contains the annotation functionality for ontologies

Files of the artifact phenol-annotations version 2.1.1 from the group org.monarchinitiative.phenol.

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Artifact phenol-annotations
Group org.monarchinitiative.phenol
Version 2.1.1
Last update 17. April 2024
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies phenol-core,
There are maybe transitive dependencies!

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Source code of phenol-annotations version 2.1.1

META-INF

META-INF.META-INF.MANIFEST.MF

org.monarchinitiative.phenol.annotations.analysis

org.monarchinitiative.phenol.annotations.analysis.org.monarchinitiative.phenol.annotations.analysis.HpoOnsetDistribution

org.monarchinitiative.phenol.annotations.analysis.org.monarchinitiative.phenol.annotations.analysis.HpoOnsetDistributionSimple

org.monarchinitiative.phenol.annotations.assoc

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.DiseaseToGeneAssociationLoader

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.FileUtils

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.GeneIdentifierLoader

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.GeneIdentifierLoaders

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.GeneInfoGeneType

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.HGNCGeneIdentifierLoader

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.HpoAssociationLoader

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.HumanGeneInfoLoader

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.Mim2GeneMedgenLoader

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.MissingPhenolResourceException

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.OrphaGeneToDiseaseParser

org.monarchinitiative.phenol.annotations.assoc.org.monarchinitiative.phenol.annotations.assoc.package-info

org.monarchinitiative.phenol.annotations.base

org.monarchinitiative.phenol.annotations.base.org.monarchinitiative.phenol.annotations.base.Ratio

org.monarchinitiative.phenol.annotations.base.org.monarchinitiative.phenol.annotations.base.RatioDefault

org.monarchinitiative.phenol.annotations.base.org.monarchinitiative.phenol.annotations.base.Sex

org.monarchinitiative.phenol.annotations.base.org.monarchinitiative.phenol.annotations.base.TermAnnotationParser

org.monarchinitiative.phenol.annotations.base.org.monarchinitiative.phenol.annotations.base.TermAnnotationParserException

org.monarchinitiative.phenol.annotations.base.temporal

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.Age

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.AgeRange

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.AgeRangeDefault

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.Ages

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.ConfidenceRange

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.PointInTime

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.PointsInTime

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.TemporalInterval

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.TemporalIntervals

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.TemporalOverlapType

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.TimelineAware

org.monarchinitiative.phenol.annotations.base.temporal.org.monarchinitiative.phenol.annotations.base.temporal.Util

org.monarchinitiative.phenol.annotations.constants.hpo

org.monarchinitiative.phenol.annotations.constants.hpo.org.monarchinitiative.phenol.annotations.constants.hpo.HpoClinicalModifierTermIds

org.monarchinitiative.phenol.annotations.constants.hpo.org.monarchinitiative.phenol.annotations.constants.hpo.HpoFrequencyTermIds

org.monarchinitiative.phenol.annotations.constants.hpo.org.monarchinitiative.phenol.annotations.constants.hpo.HpoModeOfInheritanceTermIds

org.monarchinitiative.phenol.annotations.constants.hpo.org.monarchinitiative.phenol.annotations.constants.hpo.HpoOnsetTermIds

org.monarchinitiative.phenol.annotations.constants.hpo.org.monarchinitiative.phenol.annotations.constants.hpo.HpoSubOntologyRootTermIds

org.monarchinitiative.phenol.annotations.constants.hpo.org.monarchinitiative.phenol.annotations.constants.hpo.package-info

org.monarchinitiative.phenol.annotations.formats

org.monarchinitiative.phenol.annotations.formats.org.monarchinitiative.phenol.annotations.formats.AnnotationReference

org.monarchinitiative.phenol.annotations.formats.org.monarchinitiative.phenol.annotations.formats.EvidenceCode

org.monarchinitiative.phenol.annotations.formats.org.monarchinitiative.phenol.annotations.formats.GeneIdentifier

org.monarchinitiative.phenol.annotations.formats.org.monarchinitiative.phenol.annotations.formats.GeneIdentifiers

org.monarchinitiative.phenol.annotations.formats.go

org.monarchinitiative.phenol.annotations.formats.go.org.monarchinitiative.phenol.annotations.formats.go.GoGaf21Annotation

org.monarchinitiative.phenol.annotations.formats.go.org.monarchinitiative.phenol.annotations.formats.go.GoGaf22Annotation

org.monarchinitiative.phenol.annotations.formats.go.org.monarchinitiative.phenol.annotations.formats.go.GoQualifier

org.monarchinitiative.phenol.annotations.formats.go.org.monarchinitiative.phenol.annotations.formats.go.package-info

org.monarchinitiative.phenol.annotations.formats.hpo

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.AnnotatedItem

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.AnnotatedItemContainer

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.AnnotationFrequency

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.AnnotationFrequencyDefault

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.AssociationType

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.DiseaseToGeneAssociation

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.DiseaseToGeneAssociations

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.DiseaseToGeneAssociationsDefault

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.GeneToAssociation

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoAssociationData

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoAssociationDataBuilder

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoAssociationDataDefault

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoDisease

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoDiseaseAnnotation

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoDiseaseAnnotationRecord

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoDiseaseAnnotationRecordDefault

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoDiseaseDefault

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoDiseases

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoDiseasesDefault

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoFrequency

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoFrequencyTermIds

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoGeneAnnotation

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoGeneAnnotations

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoGeneAnnotationsDefault

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoModeOfInheritanceTermIds

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoOnset

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoOnsetTermIds

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.HpoSubOntologyRootTermIds

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.Utils

org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl

org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.HpoDiseaseAnnotationRecordBacked

org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.RatioAndTemporalIntervalAware

org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.RatioAndTemporalIntervalAwareDefault

org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.TemporalRatios

org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.org.monarchinitiative.phenol.annotations.formats.hpo.annotation_impl.TemporalRatiosNaive

org.monarchinitiative.phenol.annotations.formats.hpo.category

org.monarchinitiative.phenol.annotations.formats.hpo.category.org.monarchinitiative.phenol.annotations.formats.hpo.category.HpoCategories

org.monarchinitiative.phenol.annotations.formats.hpo.category.org.monarchinitiative.phenol.annotations.formats.hpo.category.HpoCategory

org.monarchinitiative.phenol.annotations.formats.hpo.category.org.monarchinitiative.phenol.annotations.formats.hpo.category.HpoCategoryLookup

org.monarchinitiative.phenol.annotations.formats.hpo.category.org.monarchinitiative.phenol.annotations.formats.hpo.category.HpoCategoryMap

org.monarchinitiative.phenol.annotations.formats.hpo.category.org.monarchinitiative.phenol.annotations.formats.hpo.category.package-info

org.monarchinitiative.phenol.annotations.formats.hpo

org.monarchinitiative.phenol.annotations.formats.hpo.org.monarchinitiative.phenol.annotations.formats.hpo.package-info

org.monarchinitiative.phenol.annotations.formats.mpo

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpAllelicComposition

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpAnnotation

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpGeneModel

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpGeneticMarker

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpMarkerType

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpModel

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpModifier

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpModifierType

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpSex

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpSimpleModel

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpStrain

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.MpoGeneAnnotation

org.monarchinitiative.phenol.annotations.formats.mpo.org.monarchinitiative.phenol.annotations.formats.mpo.package-info

org.monarchinitiative.phenol.annotations.formats.uberpheno

org.monarchinitiative.phenol.annotations.formats.uberpheno.org.monarchinitiative.phenol.annotations.formats.uberpheno.UberphenoGeneAnnotation

org.monarchinitiative.phenol.annotations.formats.uberpheno.org.monarchinitiative.phenol.annotations.formats.uberpheno.package-info

org.monarchinitiative.phenol.annotations.hpo

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.HpoAnnotationAlgorithms

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.HpoAnnotationEntry

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.HpoAnnotationFileIngestor

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.HpoAnnotationFileParser

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.HpoAnnotationModel

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.HpoAnnotationModelException

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.ObsoleteTermIdRuntimeException

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.OrphanetInheritanceXMLParser

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.OrphanetXML2HpoDiseaseModelParser

org.monarchinitiative.phenol.annotations.hpo.org.monarchinitiative.phenol.annotations.hpo.PhenotypeDotHpoaFileWriter

org.monarchinitiative.phenol.annotations.io.go

org.monarchinitiative.phenol.annotations.io.go.org.monarchinitiative.phenol.annotations.io.go.GoGeneAnnotationParser

org.monarchinitiative.phenol.annotations.io.go.org.monarchinitiative.phenol.annotations.io.go.package-info

org.monarchinitiative.phenol.annotations.io.hpo

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.Aspect

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.DiseaseDatabase

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoAnnotationLine

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoAnnotationLineOld

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoDiseaseAnnotationParser

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoDiseaseLoader

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoDiseaseLoaderDefault

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoDiseaseLoaderOptions

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoDiseaseLoaders

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoaDiseaseData

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoaDiseaseDataContainer

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoaDiseaseDataLoader

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.HpoaDiseaseDataLoaderDefault

org.monarchinitiative.phenol.annotations.io.hpo.org.monarchinitiative.phenol.annotations.io.hpo.package-info

org.monarchinitiative.phenol.annotations.obo.mpo

org.monarchinitiative.phenol.annotations.obo.mpo.org.monarchinitiative.phenol.annotations.obo.mpo.MpAnnotationParser

org.monarchinitiative.phenol.annotations.obo.mpo.org.monarchinitiative.phenol.annotations.obo.mpo.MpGeneParser

org.monarchinitiative.phenol.annotations.obo.mpo.org.monarchinitiative.phenol.annotations.obo.mpo.package-info

org.monarchinitiative.phenol.annotations.obo

org.monarchinitiative.phenol.annotations.obo.org.monarchinitiative.phenol.annotations.obo.package-info

org.monarchinitiative.phenol.annotations.obo.uberpheno

org.monarchinitiative.phenol.annotations.obo.uberpheno.org.monarchinitiative.phenol.annotations.obo.uberpheno.UberphenoGeneAnnotationParser

org.monarchinitiative.phenol.annotations.obo.uberpheno.org.monarchinitiative.phenol.annotations.obo.uberpheno.package-info

org.monarchinitiative.phenol.annotations.obo.upheno

org.monarchinitiative.phenol.annotations.obo.upheno.org.monarchinitiative.phenol.annotations.obo.upheno.UphenoGeneAnnotationParser

org.monarchinitiative.phenol.annotations.obo.upheno.org.monarchinitiative.phenol.annotations.obo.upheno.package-info

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