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phenol-annotation contains the annotation functionality for ontologies

There is a newer version: 2.1.2

/**
 * Utilities for Human Phenotype Ontology (MPO) file I/O.
 *
 * Use for loading the MPO from OBO
 * format, the class Javadoc has a usage example.
 *
 * @author Manuel Holtgrewe
 */
package org.monarchinitiative.phenol.annotations.obo.uberpheno;