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A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.

There is a newer version: 7.10.0

org.seqdoop.hadoop_bam.cli.plugins.View
org.seqdoop.hadoop_bam.cli.plugins.Sort
org.seqdoop.hadoop_bam.cli.plugins.Index
org.seqdoop.hadoop_bam.cli.plugins.Cat
org.seqdoop.hadoop_bam.cli.plugins.FixMate
org.seqdoop.hadoop_bam.cli.plugins.VCFSort
org.seqdoop.hadoop_bam.cli.plugins.chipster.Summarize
org.seqdoop.hadoop_bam.cli.plugins.chipster.SummarySort