Download JAR files tagged by current with all dependencies

The XRadar is an open extensible code report tool currently supporting all Java based systems. The batch-processing framework produces HTML/SVG reports of the systems current state and the development over time - all presented in sexy tables and graphs. It gets results from several brilliant open source projects and a couple of in house grown projects and presents the results as massive unified html/svg reports. The architecture is based on java, xml and xsl. Presently it only supports Java, but there are plans to produce plug ins for other leading languages.

The XRadar is an open extensible code report tool currently supporting all Java based systems. The batch-processing framework produces HTML/SVG reports of the systems current state and the development over time - all presented in sexy tables and graphs. It gets results from several brilliant open source projects and a couple of in house grown projects and presents the results as massive unified html/svg reports. The architecture is based on java, xml and xsl. Presently it only supports Java, but there are to produce plug ins for other leading languages.

This component may be plugged into standard compile plugin of maven to compile JavaFX ( http://javafx.com/) sources. The component assumes that JavaFX SDK 1.2+ is installed on the machine were built process is run. Environment variable JFX_HOME should point to JavaFX installation directory (typically /usr/share/javafx-sdk1.2 for Linux machines). Version 0.3 is current one and is stable. Version 0.2 has deffect and compiles only basic code samples in all other cases it simply fail.

The XRadar is an open extensible code report tool currently supporting all Java based systems. The batch-processing framework produces HTML/SVG reports of the systems current state and the development over time - all presented in sexy tables and graphs. It gets results from several brilliant open source projects and a couple of in house grown projects and presents the results as massive unified html/svg reports. The architecture is based on java, xml and xsl. Presently it only supports Java, but there are plans to produce plug ins for other leading languages.

A tool to help visualise API differences between two different versions of a project. Jardiff takes two jar files and outputs all the public API changes as xml, html or plain text. Currently this is command line driven, though we are working on an ant plugin. It requires java 1.4 to run. <h2>Background</h2> At OSjava, we were using a shell script to work out API differences between our release versions. This unfortunately doesn't scale very well to larger projects, the main reason for jardiff was to do the same in a much shorter time (From memory it was taking minutes to get the API diff from two fairly small jars). In it's current state, jardiff can generate the api differences between rt.jar for java 1.4 and java 1.5 in under 20 seconds, so it should scale to even the largest of projects.

Class for building pace regression linear models and using them for prediction. Under regularity conditions, pace regression is provably optimal when the number of coefficients tends to infinity. It consists of a group of estimators that are either overall optimal or optimal under certain conditions. The current work of the pace regression theory, and therefore also this implementation, do not handle: - missing values - non-binary nominal attributes - the case that n - k is small where n is the number of instances and k is the number of coefficients (the threshold used in this implmentation is 20) For more information see: Wang, Y (2000). A new approach to fitting linear models in high dimensional spaces. Hamilton, New Zealand. Wang, Y., Witten, I. H.: Modeling for optimal probability prediction. In: Proceedings of the Nineteenth International Conference in Machine Learning, Sydney, Australia, 650-657, 2002.

JUNG the Java Universal Network/Graph Framework--is a software library that provides a common and extensible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. It is written in Java, which allows JUNG-based applications to make use of the extensive built-in capabilities of the Java API, as well as those of other existing third-party Java libraries. The JUNG architecture is designed to support a variety of representations of entities and their relations, such as directed and undirected graphs, multi-modal graphs, graphs with parallel edges, and hypergraphs. It provides a mechanism for annotating graphs, entities, and relations with metadata. This facilitates the creation of analytic tools for complex data sets that can examine the relations between entities as well as the metadata attached to each entity and relation. The current distribution of JUNG includes implementations of a number of algorithms from graph theory, data mining, and social network analysis, such as routines for clustering, decomposition, optimization, random graph generation, statistical analysis, and calculation of network distances, flows, and importance measures (centrality, PageRank, HITS, etc.). JUNG also provides a visualization framework that makes it easy to construct tools for the interactive exploration of network data. Users can use one of the layout algorithms provided, or use the framework to create their own custom layouts. In addition, filtering mechanisms are provided which allow users to focus their attention, or their algorithms, on specific portions of the graph.

JUNG the Java Universal Network/Graph Framework--is a software library that provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. It is written in Java, which allows JUNG-based applications to make use of the extensive built-in capabilities of the Java API, as well as those of other existing third-party Java libraries. The JUNG architecture is designed to support a variety of representations of entities and their relations, such as directed and undirected graphs, multi-modal graphs, graphs with parallel edges, and hypergraphs. It provides a mechanism for annotating graphs, entities, and relations with metadata. This facilitates the creation of analytic tools for complex data sets that can examine the relations between entities as well as the metadata attached to each entity and relation. The current distribution of JUNG includes implementations of a number of algorithms from graph theory, data mining, and social network analysis, such as routines for clustering, decomposition, optimization, random graph generation, statistical analysis, and calculation of network distances, flows, and importance measures (centrality, PageRank, HITS, etc.). JUNG also provides a visualization framework that makes it easy to construct tools for the interactive exploration of network data. Users can use one of the layout algorithms provided, or use the framework to create their own custom layouts. In addition, filtering mechanisms are provided which allow users to focus their attention, or their algorithms, on specific portions of the graph.

This plugin provides support for textlint. <h3>What&rsquo;s the textlint?</h3> <p>See <a href="https://github.com/textlint/textlint">https://github.com/textlint/textlint</a></p> <h3>Usage</h3> <h4>Install textlint and rules</h4> <p>Of course, it assumes that nodejs and npm are installed.</p> <p>e.g.</p> <pre><code>$ mkdir txtlint $ cd txtlint $ npm init $ npm install textlint --save-dev $ npm install textlint-rule-max-ten textlint-rule-spellcheck-tech-word textlint-rule-no-mix-dearu-desumasu --save-dev </code></pre> <h4>Create .textlintrc</h4> <pre><code>$ touch .textlintrc </code></pre> <pre><code class="json">{ &quot;rules&quot;: { &quot;max-ten&quot;: { &quot;max&quot;: 3 }, &quot;spellcheck-tech-word&quot;: true, &quot;no-mix-dearu-desumasu&quot;: true } } </code></pre> <p>You can also set parameters to Options (see below).</p> <h4>Set textlint and .textlintrc paths</h4> <p>Set paths to the Options (see below).</p> <p>e.g.</p> <ul> <li>textlint Path: /path/to/txtlint/node_modules/.bin/textlint (textlint.cmd in Windows)</li> <li>.textlintrc Path: /path/to/textlint/.textlintrc</li> </ul> <h4>Open Action Items window</h4> <ul> <li>Click Window > Action Items.</li> <li>Click &ldquo;Show action items for currently edited file only&rdquo; icon.</li> <li>Open your markdown or text file.</li> </ul> <h3>Options</h3> <p>Tools > Options > Editor > textlint</p> <ul> <li>textlint Path: Absolute path to textlint</li> <li>.textlintrc Path: Absolute path to .textlintrc</li> <li>Options : You can set options for the textlint command</li> <li>Enable in HTML files: To use the html plugin, you can check this</li> <li>Refresh on Save: To scan the document on save, you can check this (Checked by default)</li> <li>Show Annotations: To show annotations in the glyph gutter, you can check this (Checked by default)</li> </ul> <h3>Actions</h3> <h4>Fix</h4> <p>You have to save your file before you run this action.<br/> If there is a fixable rule&rsquo;s error, you can fix it. Right-click an item > Click <code>Fix</code>.<br/> To refresh items, your document is saved once.</p> <h4>Fix All</h4> <p>You have to save your file before you run this action.<br/> If there are fixable rule&rsquo;s errors, you can fix them. Right-click an item > Click <code>Fix All</code>.<br/> This action runs <code>textlint --fix</code> command.</p> <h4>Refresh</h4> <p>You can refresh results forcibly by the following action: Right-click your editor > Click "textlint Refresh".</p> <p>You can also set the shortcut key(Tools > Options > Keymap). </p> <h3>NOTE</h3> <ul> <li>The plugin scans only current file.</li> <li>The plugin does not refresh results automatically. Please save your file or run the refresh action.</li> <li>Use <code>UTF-8</code> as file encoding and <code>LF</code> as line endings.</li> <li>This plugin may not work properly in Windows. (Please try to check above.)</li> <li>If you cannot get expected results, just try to run the <code>textlint</code> commands once in your CLI.</li> </ul>

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.