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Package for loading a directory containing MRI data in NIfTI format. The directory to be loaded must contain as many subdirectories as there are classes of MRI data. Each subdirectory name will be used as the class label for the corresponding .nii files in that subdirectory. (This is the same strategy as the one used by WEKA's TextDirectoryLoader.) Currently, the package only reads volume information for the first time slot from each .nii file. The readDoubleVol(short ttt) method from the Nifti1Dataset class (http://niftilib.sourceforge.net/java_api_html/Nifti1Dataset.html) is used to read the data for each volume into a sparse WEKA instance (with ttt=0). For an LxMxN volume (the dimensions must be the same for each .nii file in the directory!), the order of values in the generated instance is [(z_1, y_1, x_1), ..., (z_1, y_1, x_L), (z_1, y_2, x_1), ..., (z_1, y_M, x_L), (z_2, y_1, x_1), ..., (z_N, y_M, x_L)]. If the volume is an image, then only x and y coordinates are used.

NoHR (Nova Hybrid Reasoner) is a plug-in for the ontology editor Protégé that allows its users to query knowledge bases composed of both an Ontology in OWL 2 EL or QL and a set of Reasoning Rules. Using a top-down reasoning approach, which means that only the part of the ontology and rules that is relevant for the query is actually evaluated, NoHR respectively combines the capabilities of ELK for OWL 2 EL and a dedicated direct translation for OWL 2 QL with the rule engine XSB Prolog to deliver very fast interactive response times. NoHR is the first hybrid reasoner of its kind for Protégé. NoHR is also distributed as an API.

ATG DUST is a framework for building JUnit tests for applications built on the ATG Dynamo platform. This framework allows one to quickly write test code that depends up Nucleus or ATG Repositories. By using this framework one can drastically cut down on development time. It takes only a few seconds to start up a test with a repository, but it may take multiple minutes to start up an application server. To get started with DUST, take a look at http://atgdust.sourceforge.net/first-test.html. This page will walk you through the process of running a basic test which starts Nucleus. After that, read the other getting started guides to describe how to create standalone Junit tests which can startup repositories and use the DynamoHttpServletResponse classes. For only ATG10 and tested.

Class for building a best-first decision tree classifier. This class uses binary split for both nominal and numeric attributes. For missing values, the method of 'fractional' instances is used. For more information, see: Haijian Shi (2007). Best-first decision tree learning. Hamilton, NZ. Jerome Friedman, Trevor Hastie, Robert Tibshirani (2000). Additive logistic regression : A statistical view of boosting. Annals of statistics. 28(2):337-407.

HermiT is reasoner for ontologies written using the Web Ontology Language (OWL). Given an OWL file, HermiT can determine whether or not the ontology is consistent, identify subsumption relationships between classes, and much more. This is the maven build of HermiT and is designed for people who wish to use HermiT from within the OWL API. It is now versioned in the main HermiT version repository, although not officially supported by the HermiT developers. The version number of this package is a composite of the HermiT version and an value representing releases of this packaged version. So, 1.3.7.1 is the first release of the mavenized version of HermiT based on the 1.3.7 release of HermiT. This package includes the Jautomata library (http://jautomata.sourceforge.net/), and builds with it directly. This library appears to be no longer under active development, and so a "fork" seems appropriate. No development is intended or anticipated on this code base.

Jadex XML is an XML data binding framework for Java and also for other representations. The main idea of Jadex XML is that neither the XML-Schema on the one side nor the Java classes on the other side should define the binding. Instead, a separate mapping between both is used as a mediation. This allows designing the XML representation independent of the Java side but still being able to connect both as desired. This idea was first put forward by the JiBX data binding framework. Jadex XML pushes it further by combining it with the configuration by exception principle. The framework can detect obvious correspondences between both sides automatically and only needs configuration information when translations are necessary. The configuration information is currently specified directly in form of Java configuration classes.

Reco4j is an open source project aims at developing a recommendation framework based on graph data sources. We choose graph databases for several reasons. They are NoSQL databases, so "schemaless". This means that it is possible to extend the basic data structure with intermediate information, i.e. similarity value between item and so on. Moreover, since every information is expressed with properties, nodes and relations, the recommendation process can be customized to work on every graph. Reco4j can be used on every graph where "user" and "item" is represented by node and the preferences are modelled as relationship between them. Current implementation leverage on Neo4j as first graph database integrated in our framework.