Download JAR files tagged by manipulation with all dependencies

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.

Jericho HTML Parser is a simple but powerful java library allowing analysis and manipulation of parts of an HTML document, including some common server-side tags, while reproducing verbatim any unrecognised or invalid HTML. It also provides high-level HTML form manipulation functions.

This library is a façade for image manipulation, acting as a proxy to libraries such as Java2D, JAI, ImageJ. In its early years (after 2003) it was used for photo development, metadata management and even demonstrated distributed calculus on the Sun Grid. At the end of 2016 development stopped. It resumed at the end of 2022, dropping obsolete stuff (JAI). At the moment the portions related to image manipulation are not tested. Features about metadata manipulation are being actively developed. A few scripts for U*ix and Windows systems are provided to quickly run examples: + runViewerExample.sh + runHistogramViewerExample.sh + runViewerExample.bat + runHistogramViewerExample.bat Directory tree ============== * modules/Core sources for the core component * modules/Metadata sources for the Metadata component * modules/Processor sources for the imaging processor * modules/Renderer sources for the renderer * modules/Examples/ViewerExample example about the renderer * modules/Examples/HistogramViewerExample example about histogram computation * modules/Examples/CustomOperationExample example about custom operations * modules/Examples/Miscellaneous miscellaneous examples