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This module defines the interfaces for Comparators in the TCS Alignment Toolbox. A Comparator has the purpose of defining the dissimilarity between elements in the input sequences of an Alignment. More specific information on Comparators can be found in the 'Comparator' interface. You can find a lot of helpful standard implementations of Comparators in the comparators-lib module. In the TCS Alignment Toolbox we require the output values of Comparators to lie in the range [0,1]. Many natural dissimilarities on value sets do not meet this criterion, such that additional normalization has to be applied. To that end this package also contains a Normalizer interface for functions that map real values from the range [0, infinity) to the range [0,1]. This package also provides a few convenience implementations of the Comparator interface to make the implementation of custom Comparators simpler, namely: SkipExtendedComparator, ParameterLessSkipExtendedComparator, ComparisonBasedSkipExtendedComparator, and ParameterLessComparisonBasedSkipExtendedComparator. Finally the TCS Alignment Toolbox also provides the means to learn parameters of Comparators. To enable that Comparators must implement the DerivableComparator interface to properly define the parameters that can be learned and the gradient of the dissimilarity with respect to these parameters. Gradients are stored using the Gradient interface as well as some convenience implementations of said interface, namely EmptyGradient, SingletonGradient, ArrayGradient and ListGradient.

JCQL is a tool allowing to generate boilerplate java code from existing cassandra schema. It is intended to be used with Cassandra 2.1+ due to support of UDTs (User Defined Types)/Tuples/Collections. Cassandra's UDTs/Tuples/Collections and an ability to introspect schema through java driver make it possible to automatically generate POJOs and corresponding mappers between database and java models. Properly generated java code saves development efforts and is less error-prone compared to hand coding. Accompanied with proper CI and deployment it can also guarantee consistency between database and java models at any point of application lifecycle from development to production rollout. JCQL does not rely on java reflection or annotations which means all discrepancies between actual cassandra schema and what client code expects it to be will be identified during compilation not at runtime in the middle of the night right after production release. No need to worry about Cassandra client code performance implications due to use of reflection.

<p>PMD scans Java source code and looks for potential problems like:</p> <ul> <li>Possible bugs - empty try/catch/finally/switch statements</li> <li>Dead code - unused local variables, parameters and private methods</li> <li>Suboptimal code - wasteful String/StringBuffer usage</li> <li>Overcomplicated expressions - unnecessary if statements, for loops that could be while loops</li> <li>Duplicate code - copied/pasted code means copied/pasted bugs</li> </ul> <p>You can <b><a href="http://sourceforge.net/project/showfiles.php?group_id=56262">download everything from here</a></b>, and you can get an overview of all the rules at the <a href="rules/index.html">rulesets index</a> page.</p> <p>PMD is <a href="integrations.html">integrated</a> with JDeveloper, Eclipse, JEdit, JBuilder, BlueJ, CodeGuide, NetBeans/Sun Java Studio Enterprise/Creator, IntelliJ IDEA, TextPad, Maven, Ant, Gel, JCreator, and Emacs.</p>

<p>PMD scans Java source code and looks for potential problems like:</p> <ul> <li>Possible bugs - empty try/catch/finally/switch statements</li> <li>Dead code - unused local variables, parameters and private methods</li> <li>Suboptimal code - wasteful String/StringBuffer usage</li> <li>Overcomplicated expressions - unnecessary if statements, for loops that could be while loops</li> <li>Duplicate code - copied/pasted code means copied/pasted bugs</li> </ul> <p>You can <b><a href="http://sourceforge.net/project/showfiles.php?group_id=56262">download everything from here</a></b>, and you can get an overview of all the rules at the <a href="rules/index.html">rulesets index</a> page.</p> <p>PMD is <a href="integrations.html">integrated</a> with JDeveloper, Eclipse, JEdit, JBuilder, BlueJ, CodeGuide, NetBeans/Sun Java Studio Enterprise/Creator, IntelliJ IDEA, TextPad, Maven, Ant, Gel, JCreator, and Emacs.</p>

[] (https://drone.io/bitbucket.org/tidalwave/thesefoolishthings-superpom-src/latest) A feature-rich SuperPOM for building Java projects. It features: * explicit version configuration for a number of plugins; * easy configurability by means of pre-defined properties to avoid cut & copy of plugin sections. A number of profiles, that can be easily activated, are available for: * Spring-AOP configuration; * different kinds of Continuous Integration tasks, including a full run of QA tools such as JaCoCo, FindBugs, PMD, etc... * deploying WARs and locally running them with Tomcat or Jetty; * creating a Mac OS X bundle for JavaFX applications; * creating .deb packages for both application and services; * a customized release cycle, including all requirements for the Maven Central such as signing, with a 'transactional' behaviour (all artifacts, both the DSCM and the Maven artifacts are prepared on the local disk, so they can be uploaded in a second moment); Remember to customise it ------------------------ If you use it, please remember to change the ```description```,```url```, ```organization```, ```developers```, ```license```, etc... to override those related to the development of this POM.

OpenIMAJ (Open Intelligent Multimedia in Java) is a collection of libraries and tools for multimedia analysis written in the Java programming language. OpenIMAJ intends to be the first truly complete multimedia analysis library and contains modules for analysing images, videos, text, audio and even webpages. The OpenIMAJ image and video analysis and feature extraction modules contain methods for processing visual content and extracting state-of-the-art features, including SIFT. The OpenIMAJ clustering and nearest-neighbour libraries contain efficient, multi-threaded implementations of clustering algorithms including Hierarchical K-Means and Approximate K-Means. The clustering library makes it possible to easily create visual-bag-of-words representations for images and video with very large vocabularies. The text-analysis modules contain implementations of a statistical language classifier and low-level processing pipeline. A number of modules deal with content creation, including interactive slideshows and animations. The hardware integration modules allow cross-platform integration with devices including webcams, the Microsoft Kinect, and even devices such as GPS's. OpenIMAJ also incorporates a number of tools to enable extremely-large-scale multimedia analysis using a distributed computing approach based on Apache Hadoop.

Races the cross validation error of competing attribute subsets. Use in conjuction with a ClassifierSubsetEval. RaceSearch has four modes: forward selection races all single attribute additions to a base set (initially no attributes), selects the winner to become the new base set and then iterates until there is no improvement over the base set. Backward elimination is similar but the initial base set has all attributes included and races all single attribute deletions. Schemata search is a bit different. Each iteration a series of races are run in parallel. Each race in a set determines whether a particular attribute should be included or not---ie the race is between the attribute being "in" or "out". The other attributes for this race are included or excluded randomly at each point in the evaluation. As soon as one race has a clear winner (ie it has been decided whether a particular attribute should be inor not) then the next set of races begins, using the result of the winning race from the previous iteration as new base set. Rank race first ranks the attributes using an attribute evaluator and then races the ranking. The race includes no attributes, the top ranked attribute, the top two attributes, the top three attributes, etc. It is also possible to generate a raked list of attributes through the forward racing process. If generateRanking is set to true then a complete forward race will be run---that is, racing continues until all attributes have been selected. The order that they are added in determines a complete ranking of all the attributes. Racing uses paired and unpaired t-tests on cross-validation errors of competing subsets. When there is a significant difference between the means of the errors of two competing subsets then the poorer of the two can be eliminated from the race. Similarly, if there is no significant difference between the mean errors of two competing subsets and they are within some threshold of each other, then one can be eliminated from the race.

Jsgen is a Java Source Generation Framework: That means, it should be a valuable tool, if you intend to write a custom generator for Java sources. As such, it is the successor of a previous framework, called JaxMeJS (http://jaxme.sourceforge.net/JaxMeJS/docs/index.html). The predecessor came into being as a standalone project. It was incorporated into the bigger JaxMe project, when the latter was adopted by the Apache Webservices project. And it was buried as part of the bigger project, when the latter was moved to the Apache Attic (http://svn.apache.org/repos/asf/webservices/archive/jaxme/). That was fine for quite some time, because the latest released version (JaxMeJS 0.5.2) did its job quite well. Over the years, however, the Java language has evolved, and the lack of support for features like Generics, or Annotations, became a burden. Hence the Successor: Jsgen picks up, where JaxMeJS ended. It is, however, a complete rewrite with several additional features, that the author considers to be important for modern Java applications: 1. It supports Generics. 2. It supports Annotations. 3. The builder pattern has been adopted. Almost all important classes are implemented as builders. This should make writing the actual source generators much more concise, and maintainable, than it used to be before. 4. The code style is configurable. Code styles allow you to concentrate on the actual work. The resulting Jave source will look nicely formatted, anyways. As of this writing, you can select between two builtin code styles: - The default code style is basically the authors personal free style, roughly comparable to the default code style of the Eclipse Java IDE. - As an alternative, there is also a Maven code style, which is widely used in the Open Source communities. Compared to the default style, it is less concise, if not even a bit verbose. On the other hand, it is widely adopted by projects in the vicinity of {{{https://maven.apache.org}Apache Maven}}. 5. Import lists are created, and sorted, automatically.

minitest provides a complete suite of testing facilities supporting TDD, BDD, mocking, and benchmarking. "I had a class with Jim Weirich on testing last week and we were allowed to choose our testing frameworks. Kirk Haines and I were paired up and we cracked open the code for a few test frameworks... I MUST say that minitest is *very* readable / understandable compared to the 'other two' options we looked at. Nicely done and thank you for helping us keep our mental sanity." -- Wayne E. Seguin minitest/unit is a small and incredibly fast unit testing framework. It provides a rich set of assertions to make your tests clean and readable. minitest/spec is a functionally complete spec engine. It hooks onto minitest/unit and seamlessly bridges test assertions over to spec expectations. minitest/benchmark is an awesome way to assert the performance of your algorithms in a repeatable manner. Now you can assert that your newb co-worker doesn't replace your linear algorithm with an exponential one! minitest/mock by Steven Baker, is a beautifully tiny mock (and stub) object framework. minitest/pride shows pride in testing and adds coloring to your test output. I guess it is an example of how to write IO pipes too. :P minitest/unit is meant to have a clean implementation for language implementors that need a minimal set of methods to bootstrap a working test suite. For example, there is no magic involved for test-case discovery. "Again, I can't praise enough the idea of a testing/specing framework that I can actually read in full in one sitting!" -- Piotr Szotkowski Comparing to rspec: rspec is a testing DSL. minitest is ruby. -- Adam Hawkins, "Bow Before MiniTest" minitest doesn't reinvent anything that ruby already provides, like: classes, modules, inheritance, methods. This means you only have to learn ruby to use minitest and all of your regular OO practices like extract-method refactorings still apply.

Alphatier is a resource management library. It is designed to allow different schedulers to share the resources of a pool of executors in order to execute tasks with those. Read the [detailed documentation](#io.alphatier.pools) below to get an in-depth understanding. ## License Copyright &copy; 2014 [Tobias Sarnowski](mailto:[email protected]), [Willi Schönborn](mailto:[email protected]) Permission to use, copy, modify, and distribute this software for any purpose with or without fee is hereby granted, provided that the above copyright notice and this permission notice appear in all copies. THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. ## Usage The library is written in [Clojure](http://clojure.org/) and is available in the [central Maven repository](https://repo1.maven.org/maven2/io/alphatier/alphatier/): <dependency> <groupId>io.alphatier</groupId> <artifactId>alphatier</artifactId> <version>0.3.0</version> </dependency> The library is written in pure Clojure without [ahead-of-time compilation](http://clojure.org/compilation). This means, that the library does not contain any *.class files. If you work with Clojure, this is not a problem but if you like to use the library from another JVM language (like Java, Scala or Groovy), you can use [Clojure's built-in tools](http://clojure.org/java_interop#Java%20Interop-Calling%20Clojure%20From%20Java) for interoperability or try our Java library: [https://github.com/sarnowski/alphatier-java](https://github.com/sarnowski/alphatier-java) ### Development If you like to change this library, please have a look at the [README](README.md). Development is done via [Github](https://github.com/sarnowski/alphatier).