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This project contains a JNA (Java Native Access) implementation built on top of the native Hnswlib (Hierarchical Navigable Small World Graph) which offers a fast approximate nearest neighbor search. It includes some modifications and simplifications in order to provide Hnswlib features with native like performance to applications written in Java. Differently from the original Python implementation, the multi-thread support is not included in the bindings itself but it can be easily implemented on the Java side.

This module is a custom implementation of the Large Margin Nearest Neighbor classification scheme of Weinberger, Saul, et al. (2009). It contains an implementation of the k-nearest neighbor and LMNN classifier as well as (most importantly) gradient calculation schemes on the LMNN cost function given a sequential data set and a user-choice of alignment algorithm. This enables users to learn parameters of the alignment distance in question using a gradient descent on the LMNN cost function. More information on this approach can be found in the Masters Thesis "Adaptive Affine Sequence Alignment Using Algebraic Dynamic Programming"

This project contains a Java implementation of median relational generalized learning vector quantization as proposed by Nebel, Hammer, Frohberg, and Villmann (2015, doi:10.1016/j.neucom.2014.12.096). Given a matrix of pairwise distances D and a vector of labels Y it identifies prototypical data points (i.e. rows of D) which help to classify the data set using a simple nearest neighbor rule. In particular, the algorithm optimizes the generalized learning vector quantization cost function (Sato and Yamada, 1995) via an expectation maximization scheme where in each iteration one prototype 'jumps' to another data point in order to improve the cost function. If the cost function can not be improved anymore for any of the data points, the algorithm terminates.

A filter that applies the LOF (Local Outlier Factor) algorithm to compute an outlier score for each instance in the data. Can use multiple cores/cpus to speed up the LOF computation for large datasets. Nearest neighbor search methods and distance functions are pluggable. For more information, see: Markus M. Breunig, Hans-Peter Kriegel, Raymond T. Ng, Jorg Sander (2000). LOF: Identifying Density-Based Local Outliers. ACM SIGMOD Record. 29(2):93-104.