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BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.

StaxMate is a light-weight framework that adds convenience to streaming XML-processing without significant additional overhead. It builds on top of a Stax (JSR-173) compliant XML processors such as Woodstox or Sjsxp (default Stax implementation of JDK 1.6) and offers two basic abstractions: Cursors, which build on XMLStreamReaders and Output objects, which build on XMLStreamWriters.

The Java Advanced Imaging API extends the Java 2 platform by allowing sophisticated, high-performance image processing to be incorporated into Java applets and applications. It is a set of classes providing imaging functionality beyond that of Java 2D and the Java Foundation classes, though it is designed for compatibility with those APIs. This API implements a set of core image processing capabilities including image tiling, regions of interest, deferred execution and a set of core image processing operators, including many common point, area, and frequency domain operators.

API for stackable stateful encoders and decoders. Such codec interfaces allow for the efficient processing of data as it is made available while maintaining small actively processing footprints. Of course these aspects depend on the implementation as well however this API standardizes the minimum set of interfaces associated with codec's that are stateful. Until this API is added to the commons-codec project several interfaces and classes here are duplicated to minimize the number of dependencies: namely a dependency on commons-codec will be avoided.

D-Haven Event is a library designed to make it easier to develop event based processing systems. It also includes a CommandManager to handle certain activities behind the scenes in a controlled number of background threads. The library has been fully tested, and all dependencies have been brought to a minimum.

D-Haven Event is a library designed to make it easier to develop event based processing systems. It also includes a CommandManager to handle certain activities behind the scenes in a controlled number of background threads. The library has been fully tested, and all dependencies have been brought to a minimum.

Wicket is a Java web application framework that takes simplicity, separation of concerns and ease of development to a whole new level. Wicket pages can be mocked up, previewed and later revised using standard WYSIWYG HTML design tools. Dynamic content processing and form handling is all handled in Java code using a first-class component model backed by POJO data beans that can easily be persisted using your favorite technology.

The chart-fx charting library is an extension in the spirit of Oracle's XYChart and performance/time-proven JDataViewer charting functionalities. Emphasis was put on plotting performance for both large number of data points and real-time displays, as well as scientific accuracies leading to error bar/surface plots, and other scientific plotting features (parameter measurements, fitting, multiple axes, zoom, ...). The library also contains a small set of math routines that can operate directly on the DataSet primitive for fitting, computing spectra, linear algebra, FIR/IIR filtering, and other functionalities common to signal processing.

CipherTrust Application Data Protection offers developer-friendly software tools for encryption key management as well as application-level encryption of sensitive data. CipherTrust Application Data Protection can be deployed on premises or in private or public cloud infrastructure to secure data even when it is migrating from one environment to another, without any modifications to existing encryption or data processing policies. CipherTrust Application Data Protection harmonizes interactions between developers and IT operations who share a common goal of data security. Developers enjoy language bindings appropriate to their projects. CipherTrust Application Data Protection operates with CipherTrust Manager, providing an architecture that centralizes encryption keys for applications.