Download JAR files tagged by proteomics with all dependencies

Code for data smoothing and signal processing. Intended for mass spectrometry proteomics application.

Lightweight framework for handling biological and bioinformatical data related to proteomics.

Lightweight framework for handling biological and bioinformatical data related to proteomics.

Library for general purpose in silico chemistry, mainly intended for mass spectrometry proteomics computations.

Library allowing generation of plots and data from proteomics and metabolomics mass spectrometry data through the use of R and java methods.

Protein inference toolbox that contains algorithms to merge results from search engines in mass spectrometry and proteomics. It provides functionalities to compute FDR at different levels including PSM, peptide and Protein levels.

Maltcms, short for "Modular Application Toolkit for Chromatography Mass-Spectrometry" is an application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics. Its aim is to provide reusable, efficient datastructures, abstracting from the various low-level data-formats like netcdf (ANDIMS), mzXML, mzData and mzML and providing consistent access to data features like mass spectra, chromatograms and metadata. Furthermore, Maltcms provides a platform for the implementation and execution of processing pipelines. New and existing algorithms can be easily implemented or included and executed together with existing processing elements.