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ThreadFix is a software vulnerability aggregation and management system that reduces the time it takes to fix software vulnerabilities. ThreadFix imports the results from dynamic, static and manual testing to provide a centralized view of software security defects across development teams and applications. The system allows companies to correlate testing results and streamline software remediation efforts by simplifying feeds to software issue trackers. By auto generating application firewall rules, this tool allows organizations to continue remediation work uninterrupted. ThreadFix empowers managers with vulnerability trending reports that show progress over time, giving them justification for their efforts. ThreadFix is developed and maintained by Denim Group, Ltd (http://www.denimgroup.com) For information about commercial support and other services, contact Denim Group about ThreadFix http://www.denimgroup.com/resources-threadfix/

PDF for Java - Open Source Edition License ? 2012 Innovatics Inc. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: - Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and / or other materials provided with the distribution. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

PDFjet for Java and C# - Open Source Edition License ? 2012 Innovatics Inc. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: - Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and / or other materials provided with the distribution. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Xypron Statistics is a Java library which was developped with supply chain simulation in mind. The normal, the exponential and the gamma distribution have been included. Methods to calculate fill rate and order rate service levels as well as safety factors are provided. The Mersenne Twister algorithm is used to provide high quality random number generation. Some functions for the gamma distribution where adopted from http://www.ssfnet.org/download/ssfnet_raceway-2.0.tar.gz. For these the following applies: Copyright 1999 CERN - European Organization for Nuclear Research. Permission to use, copy, modify, distribute and sell this software and its documentation for any purpose is hereby granted without fee, provided that the above copyright notice appear in all copies and that both that copyright notice and this permission notice appear in supporting documentation. CERN makes no representations about the suitability of this software for any purpose. It is provided "as is" without expressed or implied warranty.

Jadex Rules is a small lightweight rule engine, which currently employs the well-known Rete algorithm for highly efficient rule matching. Jadex rules is therefore similar to other rule engines like JESS and Drools. Despite the similarities there are also important differences between these systems: * Jadex Rules is very small and intended to be used as component of other software. Even though rules can be specified in a Java dialect as well as (a small variation of) the CLIPS language its primary usage is on the API level. Jadex Rules is currently the core component of the Jadex BDI reasoning engine. * Jadex Rules cleanly separates between state and rule representation. This allows the state implementation as well as the matcher to be flexibly exchanged. Some experiments have e.g. been conducted with a Jena representation. Regarding the matcher, it is planned to support also the Treat algorithm, which has a lower memory footprint than Rete. * Jadex Rules pays close attention to rule debugging. The state as well as the rete engine can be observed at runtime. The rule debugger provides functionalities to execute a rule program stepwise and also use rule breakpoints to stop the execution at those points.

JUNG the Java Universal Network/Graph Framework--is a software library that provides a common and extensible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. It is written in Java, which allows JUNG-based applications to make use of the extensive built-in capabilities of the Java API, as well as those of other existing third-party Java libraries. The JUNG architecture is designed to support a variety of representations of entities and their relations, such as directed and undirected graphs, multi-modal graphs, graphs with parallel edges, and hypergraphs. It provides a mechanism for annotating graphs, entities, and relations with metadata. This facilitates the creation of analytic tools for complex data sets that can examine the relations between entities as well as the metadata attached to each entity and relation. The current distribution of JUNG includes implementations of a number of algorithms from graph theory, data mining, and social network analysis, such as routines for clustering, decomposition, optimization, random graph generation, statistical analysis, and calculation of network distances, flows, and importance measures (centrality, PageRank, HITS, etc.). JUNG also provides a visualization framework that makes it easy to construct tools for the interactive exploration of network data. Users can use one of the layout algorithms provided, or use the framework to create their own custom layouts. In addition, filtering mechanisms are provided which allow users to focus their attention, or their algorithms, on specific portions of the graph.

JUNG the Java Universal Network/Graph Framework--is a software library that provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. It is written in Java, which allows JUNG-based applications to make use of the extensive built-in capabilities of the Java API, as well as those of other existing third-party Java libraries. The JUNG architecture is designed to support a variety of representations of entities and their relations, such as directed and undirected graphs, multi-modal graphs, graphs with parallel edges, and hypergraphs. It provides a mechanism for annotating graphs, entities, and relations with metadata. This facilitates the creation of analytic tools for complex data sets that can examine the relations between entities as well as the metadata attached to each entity and relation. The current distribution of JUNG includes implementations of a number of algorithms from graph theory, data mining, and social network analysis, such as routines for clustering, decomposition, optimization, random graph generation, statistical analysis, and calculation of network distances, flows, and importance measures (centrality, PageRank, HITS, etc.). JUNG also provides a visualization framework that makes it easy to construct tools for the interactive exploration of network data. Users can use one of the layout algorithms provided, or use the framework to create their own custom layouts. In addition, filtering mechanisms are provided which allow users to focus their attention, or their algorithms, on specific portions of the graph.

Jadex Rules is a small lightweight rule engine, which currently employs the well-known Rete algorithm for highly efficient rule matching. Jadex rules is therefore similar to other rule engines like JESS and Drools. Despite the similarities there are also important differences between these systems: * Jadex Rules is very small and intended to be used as component of other software. Even though rules can be specified in a Java dialect as well as (a small variation of) the CLIPS language its primary usage is on the API level. Jadex Rules is currently the core component of the Jadex BDI reasoning engine. * Jadex Rules cleanly separates between state and rule representation. This allows the state implementation as well as the matcher to be flexibly exchanged. Some experiments have e.g. been conducted with a Jena representation. Regarding the matcher, it is planned to support also the Treat algorithm, which has a lower memory footprint than Rete. * Jadex Rules pays close attention to rule debugging. The state as well as the rete engine can be observed at runtime. The rule debugger provides functionalities to execute a rule program stepwise and also use rule breakpoints to stop the execution at those points.

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.

JUNG the Java Universal Network/Graph Framework--is a software library that provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. It is written in Java, which allows JUNG-based applications to make use of the extensive built-in capabilities of the Java API, as well as those of other existing third-party Java libraries. The JUNG architecture is designed to support a variety of representations of entities and their relations, such as directed and undirected graphs, multi-modal graphs, graphs with parallel edges, and hypergraphs. It provides a mechanism for annotating graphs, entities, and relations with metadata. This facilitates the creation of analytic tools for complex data sets that can examine the relations between entities as well as the metadata attached to each entity and relation. The current distribution of JUNG includes implementations of a number of algorithms from graph theory, data mining, and social network analysis, such as routines for clustering, decomposition, optimization, random graph generation, statistical analysis, and calculation of network distances, flows, and importance measures (centrality, PageRank, HITS, etc.). JUNG also provides a visualization framework that makes it easy to construct tools for the interactive exploration of network data. Users can use one of the layout algorithms provided, or use the framework to create their own custom layouts. In addition, filtering mechanisms are provided which allow users to focus their attention, or their algorithms, on specific portions of the graph.