Download JAR files tagged by spectrometry with all dependencies

msdk-spectra from group io.github.msdk (version 0.0.9)

Group: io.github.msdk Artifact: msdk-spectra
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Artifact msdk-spectra
Group io.github.msdk
Version 0.0.9
Last update 26. August 2017
Organization not specified
URL Not specified
License not specified
Dependencies amount 0
Dependencies No dependencies
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msdk-spectra-spectrumtypedetection from group io.github.msdk (version 0.0.9)

Group: io.github.msdk Artifact: msdk-spectra-spectrumtypedetection
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Artifact msdk-spectra-spectrumtypedetection
Group io.github.msdk
Version 0.0.9
Last update 26. August 2017
Organization not specified
URL Not specified
License not specified
Dependencies amount 3
Dependencies msdk-datamodel, jmzml, commons-math3,
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msdk-test from group io.github.msdk (version 0.0.8)

Group: io.github.msdk Artifact: msdk-test
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Artifact msdk-test
Group io.github.msdk
Version 0.0.8
Last update 17. June 2017
Organization not specified
URL Not specified
License not specified
Dependencies amount 2
Dependencies junit, slf4j-log4j12,
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Signal from group se.lth.immun (version 1.0.1)

Code for data smoothing and signal processing. Intended for mass spectrometry proteomics application.

Group: se.lth.immun Artifact: Signal
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Artifact Signal
Group se.lth.immun
Version 1.0.1
Last update 19. May 2016
Organization not specified
URL https://github.com/fickludd/proteomicore
License The Apache License, Version 2.0
Dependencies amount 2
Dependencies scala-library, commons-math3,
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peakinvestigator-sdk from group com.veritomyx (version 5.4)

PeakInvestigator™ is advanced centroiding and deconvolution software services for mass spectrometry. This library provides an object-oriented interface to its public API.

Group: com.veritomyx Artifact: peakinvestigator-sdk
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Artifact peakinvestigator-sdk
Group com.veritomyx
Version 5.4
Last update 25. January 2017
Organization not specified
URL https://peakinvestigator.veritomyx.com/api
License BSD 3-Clause
Dependencies amount 4
Dependencies slf4j-api, jtar, jsch, json-simple,
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Proteins from group se.lth.immun (version 1.3.3)

Library for general purpose in silico chemistry, mainly intended for mass spectrometry proteomics computations.

Group: se.lth.immun Artifact: Proteins
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Artifact Proteins
Group se.lth.immun
Version 1.3.3
Last update 20. May 2016
Organization not specified
URL https://github.com/fickludd/proteomicore
License The Apache License, Version 2.0
Dependencies amount 0
Dependencies No dependencies
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analytica-lib from group uk.ac.liv.pgb (version 0.01)

Library allowing generation of plots and data from proteomics and metabolomics mass spectrometry data through the use of R and java methods.

Group: uk.ac.liv.pgb Artifact: analytica-lib
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Artifact analytica-lib
Group uk.ac.liv.pgb
Version 0.01
Last update 28. April 2016
Organization not specified
URL http://bitbucket.org/slurmclassic/analytica-lib
License not specified
Dependencies amount 2
Dependencies JRI, jmzquantml,
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pia from group io.github.bigbio.external (version 1.3.23)

Protein inference toolbox that contains algorithms to merge results from search engines in mass spectrometry and proteomics. It provides functionalities to compute FDR at different levels including PSM, peptide and Protein levels.

Group: io.github.bigbio.external Artifact: pia
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Artifact pia
Group io.github.bigbio.external
Version 1.3.23
Last update 02. December 2021
Organization Medizinisches Proteom-Center, Medical Bioinformatics
URL https://github.com/mpc-bioinformatics/pia
License BSD license
Dependencies amount 25
Dependencies lombok, picocli, commons-lang3, commons-collections4, jmzidentml, jaxb-api, jaxb-impl, jaxb-core, pride-mod, jmztab, px-submission-core, gson, pride-jaxb, fastutil, xxindex, mascotdatfile, xtandem-parser, biojava-ontology, BaseLib, CvtBaseLib, PDLibrary, sqlite4java, sqlite-jdbc, ehcache, utilities,
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arrayexpress-reader from group uk.ac.ebi.ddi.arrayexpress (version 1.4)

The jmzReader library is a collection of parsers to process the most commonly used Mass Spectrometry text and xml based file formats using a single interface.

Group: uk.ac.ebi.ddi.arrayexpress Artifact: arrayexpress-reader
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Artifact arrayexpress-reader
Group uk.ac.ebi.ddi.arrayexpress
Version 1.4
Last update 30. July 2019
Organization not specified
URL Not specified
License not specified
Dependencies amount 0
Dependencies No dependencies
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xTracker from group org.bessantlab (version 2.0.1)

X-Tracker is a PSI-standards-compliant software framework for supporting mass spectrometry-based protein quantitation. Through an abstraction of the main steps involved in quantitation, X-Tracker should technically be able to support quantitation by means of all the current protocols, both at MS1 and/or MS2 level, and provide a flexible, platform-independent quantitation environment.

Group: org.bessantlab Artifact: xTracker
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Artifact xTracker
Group org.bessantlab
Version 2.0.1
Last update 09. March 2016
Organization not specified
URL http://x-Tracker.info
License The Apache License, Version 2.0
Dependencies amount 8
Dependencies xstream, jxl, xpp3, jmztab, Jama, jmzidentml, jmzquantml, jmzml,
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