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julielab-concept-creation-hgnc-groups from group de.julielab (version 1.3.1)

Group: de.julielab Artifact: julielab-concept-creation-hgnc-groups
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Artifact julielab-concept-creation-hgnc-groups
Group de.julielab
Version 1.3.1
Last update 23. January 2023
Organization not specified
URL Not specified
License not specified
Dependencies amount 2
Dependencies julielab-concept-db-manager-core, commons-csv,
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julielab-concept-db-application from group de.julielab (version 1.3.1)

Group: de.julielab Artifact: julielab-concept-db-application
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Artifact julielab-concept-db-application
Group de.julielab
Version 1.3.1
Last update 23. January 2023
Organization not specified
URL Not specified
License not specified
Dependencies amount 5
Dependencies julielab-concept-db-manager-core, commons-io, args4j, julielab-java-utilities, logback-classic,
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julielab-concept-db-manager from group de.julielab (version 1.3.1)

This project is a collection of tools with the goal to import ontological concepts into a graph database. The graph database then allows to traverse the imported data with a graph-specific query language. In case of a Neo4j database, which is the one employed by this tool, uses the Cypher query language.

Group: de.julielab Artifact: julielab-concept-db-manager
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Artifact julielab-concept-db-manager
Group de.julielab
Version 1.3.1
Last update 23. January 2023
Organization not specified
URL Not specified
License not specified
Dependencies amount 2
Dependencies assertj-core, testng,
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mockserver-netty-no-dependencies from group org.mock-server (version 5.15.0)

Group: org.mock-server Artifact: mockserver-netty-no-dependencies
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Artifact mockserver-netty-no-dependencies
Group org.mock-server
Version 5.15.0
Last update 11. January 2023
Organization not specified
URL https://www.mock-server.com
License not specified
Dependencies amount 0
Dependencies No dependencies
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mockserver-netty from group org.mock-server (version 5.15.0)

Group: org.mock-server Artifact: mockserver-netty
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Artifact mockserver-netty
Group org.mock-server
Version 5.15.0
Last update 11. January 2023
Organization not specified
URL https://www.mock-server.com
License not specified
Dependencies amount 13
Dependencies mockserver-client-java, mockserver-core, netty-buffer, netty-codec, netty-codec-http, netty-codec-http2, netty-common, netty-handler, netty-transport, netty-tcnative-boringssl-static, commons-io, guava, slf4j-api,
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mockserver from group org.mock-server (version 5.15.0)

A simple server to support mocking responses from any server / service that uses HTTP. The expectations that configure how the MockServer will respond and to incoming requests can be setup using any language that can create JSON. In simple client is provided to make this easy in Java.

Group: org.mock-server Artifact: mockserver
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Artifact mockserver
Group org.mock-server
Version 5.15.0
Last update 11. January 2023
Organization not specified
URL https://www.mock-server.com
License The Apache Software License, Version 2.0
Dependencies amount 0
Dependencies No dependencies
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anythingworks-exampleproject from group com.optimaize.anythingworks.exampleproject (version 1.1.0)

A code example for how to use the anythingworks library. The submodules are: server: a sample server app that runs a web service. clientlib: the matching web service client library that uses soap/wsdl to connect to the server. clientapp: a sample client app that uses the clientlib to connect to the server. To test it, run the Boot class and then execute the PingServiceImplTest.

Group: com.optimaize.anythingworks.exampleproject Artifact: anythingworks-exampleproject
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Artifact anythingworks-exampleproject
Group com.optimaize.anythingworks.exampleproject
Version 1.1.0
Last update 20. December 2022
Organization not specified
URL Not specified
License not specified
Dependencies amount 2
Dependencies logback-classic, jul-to-slf4j,
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jcore-medline-db-reader from group de.julielab (version 2.6.0)

An instantiation of the jcore-db-reader that uses the jcore-xml-mapper to retrieve and parse MEDLINE XML from a PostgreSQL database. The XML format of retrieved documents is expected to follow the MEDLINE XML schema that was used until inclusive 2016. I.e. the root element of MEDLINE documents must be MedlineCitation and not, as it is since 2017, PubmedArticle.

Group: de.julielab Artifact: jcore-medline-db-reader
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Artifact jcore-medline-db-reader
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization JULIE Lab, Germany
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-pubmed-db-reader
License BSD-2-Clause
Dependencies amount 2
Dependencies jcore-xml-db-reader, jcore-descriptor-creator,
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jaxb2-fluent-api from group codes.rafael.jaxb2_commons (version 3.0.0)

Causes JAXB RI 2 XJC to generate additional methods that allows method chaining. Method chaining is useful when building object tree in memory, allowing the code to be done in a concise way. The code that uses this plugin can still run with any JAXB2 implementation.

Group: codes.rafael.jaxb2_commons Artifact: jaxb2-fluent-api
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Artifact jaxb2-fluent-api
Group codes.rafael.jaxb2_commons
Version 3.0.0
Last update 29. November 2022
Organization not specified
URL https://github.com/raphw/jaxb2-commons
License The Apache Software License, Version 2.0
Dependencies amount 0
Dependencies No dependencies
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jcore-bionlpgold-pred-gene-merge-ae from group de.julielab (version 2.6.0)

Given the gold BioNLP ST gene mentions and other gene mentions - possibly from gene recognizer - merges the two different sources of genes. For simplicity, this component employs two different types to represent genes. The BioNLP ST reader uses the de.julielab.jcore.types.Gene type. The other genes should be realized with de.julielab.jcore.types.Protein annotations.

Group: de.julielab Artifact: jcore-bionlpgold-pred-gene-merge-ae
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Artifact jcore-bionlpgold-pred-gene-merge-ae
Group de.julielab
Version 2.6.0
Last update 25. November 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlpgold-pred-gene-merge-ae
License BSD 2-Clause
Dependencies amount 5
Dependencies jcore-utilities, slf4j-api, jcore-types, jcore-descriptor-creator, junit-jupiter-engine,
There are maybe transitive dependencies!

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