Download JAR files tagged by biopax with all dependencies

paxtools-search from group org.biopax.paxtools (version 5.3.0)

BioPAX full-text indexing and searching (Lucene based)

Group: org.biopax.paxtools Artifact: paxtools-search
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Artifact paxtools-search
Group org.biopax.paxtools
Version 5.3.0
Last update 06. August 2023
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 5
Dependencies paxtools-core, lucene-core, lucene-highlighter, lucene-analyzers-common, lucene-queryparser,
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paxtools-jena-io from group org.biopax.paxtools (version 4.3.1)

Provides an additional I/O support for BioPAX OWL models using Jena library.

Group: org.biopax.paxtools Artifact: paxtools-jena-io
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Artifact paxtools-jena-io
Group org.biopax.paxtools
Version 4.3.1
Last update 22. September 2015
Organization not specified
URL http://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies paxtools-core, jena,
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paxtools-query from group org.biopax.paxtools (version 6.0.0)

BioPAX graph-theoretic querying - for finding paths between molecules, or identifying molecules that are reachable through specific paths, using the BioPAX pathway data model.

Group: org.biopax.paxtools Artifact: paxtools-query
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Artifact paxtools-query
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
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pattern from group org.biopax.paxtools (version 6.0.0)

BioPAX Pattern Search library. Also, converts BioPAX model to SIF (simple binary interactions) text format.

Group: org.biopax.paxtools Artifact: pattern
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Artifact pattern
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies paxtools-core, normalizer,
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paxtools-archetype from group org.biopax.paxtools (version 5.3.0)

Paxtools Maven archetype - sample Java project to quickly start using Paxtools library and BioPAX data.

Group: org.biopax.paxtools Artifact: paxtools-archetype
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Artifact paxtools-archetype
Group org.biopax.paxtools
Version 5.3.0
Last update 06. August 2023
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 0
Dependencies No dependencies
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sif-converter from group org.biopax.paxtools (version 4.3.1)

Converts a BioPAX model to binary SIF (simple interaction format) or extended binary SIF by inferring the interactions in the model and describing them in terms of simple interactions. This includes a set of BioPAX-specific inference rules implemented on top of paxtools-core.

Group: org.biopax.paxtools Artifact: sif-converter
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Artifact sif-converter
Group org.biopax.paxtools
Version 4.3.1
Last update 22. September 2015
Organization not specified
URL http://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
There are maybe transitive dependencies!

parent from group org.biopax.validator (version 6.0.0)

The BioPAX Validator Project (including a general-purpose object model validation and error reporting API core, OBO ontologies manager, MIRIAM registry access (to resolve bio db names and identifiers), hundreds BioPAX Level3 rules, settings, and the console and web applications)

Group: org.biopax.validator Artifact: parent
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Artifact parent
Group org.biopax.validator
Version 6.0.0
Last update 25. May 2024
Organization BioPAX.org
URL https://biopax.github.io/validator
License MIT
Dependencies amount 3
Dependencies javax.annotation-api, jakarta.activation-api, slf4j-api,
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paxtools-core from group org.biopax.paxtools (version 6.0.0)

Paxtools core library includes the BioPAX object model and interfaces, the default implementation and extras: reflection-based class factories and property editors/accessors, some inverse properties (e.g., xrefOf, componentOf), traversal, and file (I/O) utilities.

Group: org.biopax.paxtools Artifact: paxtools-core
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Artifact paxtools-core
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies collections-generic, commons-lang3,
There are maybe transitive dependencies!

paxtools from group org.biopax.paxtools (version 6.0.0)

Paxtools is a Java library that allows software to read, write, analyze and manipulate BioPAX models. Paxtools provide a consistent, fully implemented, validating BioPAX API that significantly reduces development time of oftware that require programmatic access to BioPAX. Paxtools is modular, lightweight and platform independent to be easily embedded into applications.

Group: org.biopax.paxtools Artifact: paxtools
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Artifact paxtools
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization BioPAX
URL https://biopax.github.io/Paxtools
License MIT license
Dependencies amount 1
Dependencies slf4j-api,
There are maybe transitive dependencies!

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