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paxtools from group org.biopax.paxtools (version 5.0.1)

Paxtools is a Java library that allows software to read, write, analyze and manipulate BioPAX models. Paxtools provide a consistent, fully implemented, validating BioPAX API that significantly reduces development time of oftware that require programmatic access to BioPAX. Paxtools is modular, lightweight and platform independent to be easily embedded into applications.

Group: org.biopax.paxtools Artifact: paxtools
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Artifact paxtools
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization BioPAX
URL https://biopax.github.io/Paxtools
License LGPL 2.0 license
Dependencies amount 1
Dependencies slf4j-api,
There are maybe transitive dependencies!



normalizer from group org.biopax.paxtools (version 5.0.1)

A BioPAX Normalizer and modified off-line MiriamLink (MIRIAM, EBI, OLS)

Group: org.biopax.paxtools Artifact: normalizer
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Artifact normalizer
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
There are maybe transitive dependencies!



paxtools-archetype from group org.biopax.paxtools (version 5.0.1)

Paxtools Maven archetype - sample Java project to quickly start using Paxtools library and BioPAX data.

Group: org.biopax.paxtools Artifact: paxtools-archetype
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Artifact paxtools-archetype
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!



pattern from group org.biopax.paxtools (version 5.0.1)

The BioPAX Pattern Search library; also, e.g., converts BioPAX model to SIF (simple binary interactions) text format.

Group: org.biopax.paxtools Artifact: pattern
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Artifact pattern
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
There are maybe transitive dependencies!



paxtools-console from group org.biopax.paxtools (version 5.0.1)

Paxtools Console Application and Examples

Group: org.biopax.paxtools Artifact: paxtools-console
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Artifact paxtools-console
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 9
Dependencies paxtools-core, psimi-converter, gsea-converter, sbgn-converter, paxtools-query, pattern, normalizer, fluent-hc, httpmime,
There are maybe transitive dependencies!



json-converter from group org.biopax.paxtools (version 5.0.1)

BioPAX to/from JSON Converters

Group: org.biopax.paxtools Artifact: json-converter
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3 downloads
Artifact json-converter
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 3
Dependencies apache-jena-libs, jena, paxtools-core,
There are maybe transitive dependencies!



paxtools-core from group org.biopax.paxtools (version 5.0.1)

Paxtools core library includes the BioPAX object model and interfaces, the default implementation and extras: reflection-based class factories and property editors/accessors, some inverse properties (e.g., xrefOf, componentOf), traversal and file (I/O) utilities.

Group: org.biopax.paxtools Artifact: paxtools-core
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Artifact paxtools-core
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies collections-generic, commons-lang3,
There are maybe transitive dependencies!



paxtools-query from group org.biopax.paxtools (version 5.0.1)

BioPAX graph-theoretic querying - for finding paths between molecules, or identifying molecules that are reachable through specific paths, using the BioPAX pathway data model.

Group: org.biopax.paxtools Artifact: paxtools-query
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0 downloads
Artifact paxtools-query
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
There are maybe transitive dependencies!



paxtools-trove from group org.biopax.paxtools (version 5.0.1)

A Trove4j based java collections provider for the paxtools-core BioPAX model.

Group: org.biopax.paxtools Artifact: paxtools-trove
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0 downloads
Artifact paxtools-trove
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies paxtools-core, trove4j,
There are maybe transitive dependencies!



gsea-converter from group org.biopax.paxtools (version 5.0.1)

Converts data to the GESA (.gmt) format.

Group: org.biopax.paxtools Artifact: gsea-converter
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0 downloads
Artifact gsea-converter
Group org.biopax.paxtools
Version 5.0.1
Last update 08. May 2017
Newest version Yes
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
There are maybe transitive dependencies!





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