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    Download jannovar-core JAR 0.19 with all dependencies


    jannovar-core is a library for the functional annotation of genomic variants

    Files of the artifact jannovar-core version 0.19 from the group de.charite.compbio.

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    Artifact jannovar-core
    Group de.charite.compbio
    Version 0.19
    Last update 08. December 2016
    Tags: annotation genomic functional library variants core jannovar
    Organization not specified
    URL http://charite.github.io/jannovar/
    License not specified
    Dependencies amount 5
    Dependencies commons-io, commons-net, guava, jannovar-hgvs, ini4j,
    There are maybe transitive dependencies!
    There is a newer version: 0.41
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    Source code of jannovar-core version 0.19

    META-INF
    META-INF.META-INF.MANIFEST.MF
    de.charite.compbio.jannovar
    de.charite.compbio.jannovar.de.charite.compbio.jannovar.Immutable
    de.charite.compbio.jannovar.de.charite.compbio.jannovar.JannovarException
    de.charite.compbio.jannovar.de.charite.compbio.jannovar.UncheckedJannovarException
    de.charite.compbio.jannovar.annotation
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AllAnnotationListTextGenerator
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.Annotation
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AnnotationException
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AnnotationLocation
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AnnotationLocationBuilder
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AnnotationMessage
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.BestAnnotationListTextGenerator
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.InvalidGenomeVariant
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.OldVariantType
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.PutativeImpact
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VCFAnnotationData
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantAnnotations
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantAnnotationsContentDecorator
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantAnnotationsTextGenerator
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantAnnotator
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantEffect
    de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantEffectPrinter
    de.charite.compbio.jannovar.annotation.builders
    de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.AnnotationBuilder
    de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.AnnotationBuilderDispatcher
    de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.AnnotationBuilderOptions
    de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.BlockSubstitutionAnnotationBuilder
    de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.DeletionAnnotationBuilder
    de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.GenomicNucleotideChangeBuilder
    de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.InsertionAnnotationBuilder
    de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SNVAnnotationBuilder
    de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.StructuralVariantAnnotationBuilder
    de.charite.compbio.jannovar.data
    de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.Chromosome
    de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.JannovarData
    de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.JannovarDataSerializer
    de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.ReferenceDictionary
    de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.ReferenceDictionaryBuilder
    de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.SerializationException
    de.charite.compbio.jannovar.datasource
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.DataSource
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.DataSourceFactory
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.DatasourceOptions
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.EnsemblDataSource
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.EnsemblJannovarDataFactory
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.FileDownloadException
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.FileDownloader
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.FlatBEDDataSource
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.FlatBEDJannovarDataFactory
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.InvalidDataSourceException
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.JannovarDataFactory
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.RefSeqDataSource
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.RefSeqJannovarDataFactory
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.TranscriptModelBuilderHGNCExtender
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.UCSCDataSource
    de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.UCSCJannovarDataFactory
    de.charite.compbio.jannovar.hgnc
    de.charite.compbio.jannovar.hgnc.de.charite.compbio.jannovar.hgnc.AltGeneIDType
    de.charite.compbio.jannovar.hgnc.de.charite.compbio.jannovar.hgnc.HGNCParser
    de.charite.compbio.jannovar.hgnc.de.charite.compbio.jannovar.hgnc.HGNCRecord
    de.charite.compbio.jannovar.impl.intervals
    de.charite.compbio.jannovar.impl.intervals.de.charite.compbio.jannovar.impl.intervals.Interval
    de.charite.compbio.jannovar.impl.intervals.de.charite.compbio.jannovar.impl.intervals.IntervalArray
    de.charite.compbio.jannovar.impl.intervals.de.charite.compbio.jannovar.impl.intervals.IntervalEndExtractor
    de.charite.compbio.jannovar.impl.intervals.de.charite.compbio.jannovar.impl.intervals.MutableInterval
    de.charite.compbio.jannovar.impl.parse
    de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.FASTAParser
    de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.FASTARecord
    de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.InvalidAttributeException
    de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.ReferenceDictParser
    de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.TranscriptParseException
    de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.TranscriptParser
    de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.TranscriptSupportLevelsSetterFromLengths
    de.charite.compbio.jannovar.impl.parse.ensembl
    de.charite.compbio.jannovar.impl.parse.ensembl.de.charite.compbio.jannovar.impl.parse.ensembl.EnsemblParser
    de.charite.compbio.jannovar.impl.parse.flatbed
    de.charite.compbio.jannovar.impl.parse.flatbed.de.charite.compbio.jannovar.impl.parse.flatbed.FlatBEDFastaParser
    de.charite.compbio.jannovar.impl.parse.flatbed.de.charite.compbio.jannovar.impl.parse.flatbed.FlatBEDParser
    de.charite.compbio.jannovar.impl.parse.gtfgff
    de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.FeatureRecord
    de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.FeatureRecordParser
    de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.GFFParser
    de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.GFFRecordParser
    de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.GTFRecordParser
    de.charite.compbio.jannovar.impl.parse.refseq
    de.charite.compbio.jannovar.impl.parse.refseq.de.charite.compbio.jannovar.impl.parse.refseq.RefSeqParser
    de.charite.compbio.jannovar.impl.parse.ucsc
    de.charite.compbio.jannovar.impl.parse.ucsc.de.charite.compbio.jannovar.impl.parse.ucsc.UCSCParser
    de.charite.compbio.jannovar.impl.util
    de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.DNAUtils
    de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.PathUtil
    de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.ProgressBar
    de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.StringUtil
    de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.Translator
    de.charite.compbio.jannovar.mendel
    de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.ChromosomeType
    de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.Genotype
    de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.GenotypeBuilder
    de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.GenotypeCalls
    de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.GenotypeCallsBuilder
    de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.IncompatiblePedigreeException
    de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.MendelianInheritanceChecker
    de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.ModeOfInheritance
    de.charite.compbio.jannovar.mendel.impl
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.AbstractMendelianChecker
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.Candidate
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerAD
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerAR
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerARCompoundHet
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerARHom
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerXD
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerXR
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerXRCompoundHet
    de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerXRHom
    de.charite.compbio.jannovar.pedigree
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Disease
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Genotype
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.GenotypeList
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.GenotypeListBuilder
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedFileContents
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedFileReader
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedFileWriter
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedParseException
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedPerson
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Pedigree
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedigreeExtractor
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedigreeQueryDecorator
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Person
    de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Sex
    de.charite.compbio.jannovar.reference
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.AminoAcidChange
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.AminoAcidChangeNormalizer
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.CDSInterval
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.CDSPosition
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.DuplicationChecker
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomeInterval
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomePosition
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomeVariant
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomeVariantNormalizer
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomeVariantType
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.HG19RefDictBuilder
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.InvalidCodonException
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.InvalidCoordinateException
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.NucleotidePointLocationBuilder
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.PositionType
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.ProjectionException
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.Strand
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptInterval
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptIntervalEndExtractor
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptModel
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptModelBuilder
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptPosition
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptProjectionDecorator
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptSequenceChangeHelper
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptSequenceDecorator
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptSequenceOntologyDecorator
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptSupportLevels
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.VariantDataCorrector
    de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.VariantDescription




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