Download lphy-base JAR 1.5.0 with all dependencies

The standard library of LPhy, which contains the required generative distributions and basic functions.

Files of the artifact lphy-base version 1.5.0 from the group io.github.linguaphylo.

Artifact lphy-base
Group io.github.linguaphylo
Version 1.5.0
Last update 01. February 2024
Tags: standard which generative contains library functions lphy basic required distributions
Organization not specified
URL https://linguaphylo.github.io/
License GNU Lesser General Public License, version 3
Dependencies amount 1
Dependencies jebl,
There are maybe transitive dependencies!

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Source code of lphy-base version 1.5.0

META-INF

META-INF.META-INF.LICENSE

META-INF.META-INF.MANIFEST.MF

META-INF.services

META-INF.services.META-INF.services.lphy.core.spi.Extension

lphy.base

lphy.base.lphy.base.ParameterNames

lphy.base.array

lphy.base.array.lphy.base.array.StringDoubleArrayMap

lphy.base.bmodeltest

lphy.base.bmodeltest.lphy.base.bmodeltest.BModelSet

lphy.base.bmodeltest.lphy.base.bmodeltest.BModelSetFunction

lphy.base.bmodeltest.lphy.base.bmodeltest.NucleotideModel

lphy.base.bmodeltest.lphy.base.bmodeltest.bSiteModelFunction

lphy.base.bmodeltest.lphy.base.bmodeltest.bSiteRates

lphy.base.distribution

lphy.base.distribution.lphy.base.distribution.Bernoulli

lphy.base.distribution.lphy.base.distribution.BernoulliMulti

lphy.base.distribution.lphy.base.distribution.Beta

lphy.base.distribution.lphy.base.distribution.Binomial

lphy.base.distribution.lphy.base.distribution.Categorical

lphy.base.distribution.lphy.base.distribution.Cauchy

lphy.base.distribution.lphy.base.distribution.Dirichlet

lphy.base.distribution.lphy.base.distribution.DiscretizedGamma

lphy.base.distribution.lphy.base.distribution.DistributionConstants

lphy.base.distribution.lphy.base.distribution.Exp

lphy.base.distribution.lphy.base.distribution.ExpMarkovChain

lphy.base.distribution.lphy.base.distribution.ExpMulti

lphy.base.distribution.lphy.base.distribution.Gamma

lphy.base.distribution.lphy.base.distribution.GeneralLinearModel

lphy.base.distribution.lphy.base.distribution.Geometric

lphy.base.distribution.lphy.base.distribution.InverseGamma

lphy.base.distribution.lphy.base.distribution.LogNormal

lphy.base.distribution.lphy.base.distribution.LogNormalMulti

lphy.base.distribution.lphy.base.distribution.MVN

lphy.base.distribution.lphy.base.distribution.NegativeBinomial

lphy.base.distribution.lphy.base.distribution.Normal

lphy.base.distribution.lphy.base.distribution.NormalGamma

lphy.base.distribution.lphy.base.distribution.OrnsteinUhlenbeck

lphy.base.distribution.lphy.base.distribution.ParametricDistribution

lphy.base.distribution.lphy.base.distribution.Poisson

lphy.base.distribution.lphy.base.distribution.RandomBooleanArray

lphy.base.distribution.lphy.base.distribution.RandomComposition

lphy.base.distribution.lphy.base.distribution.Sample

lphy.base.distribution.lphy.base.distribution.Uniform

lphy.base.distribution.lphy.base.distribution.UniformDiscrete

lphy.base.distribution.lphy.base.distribution.Weibull

lphy.base.distribution.lphy.base.distribution.WeightedDirichlet

lphy.base.evolution

lphy.base.evolution.lphy.base.evolution.Attributable

lphy.base.evolution.lphy.base.evolution.EvolutionConstants

lphy.base.evolution.lphy.base.evolution.ExtractStringMetaData

lphy.base.evolution.lphy.base.evolution.HasTaxa

lphy.base.evolution.lphy.base.evolution.NChar

lphy.base.evolution.lphy.base.evolution.Taxa

lphy.base.evolution.lphy.base.evolution.TaxaData

lphy.base.evolution.lphy.base.evolution.Taxon

lphy.base.evolution.alignment

lphy.base.evolution.alignment.lphy.base.evolution.alignment.AbstractAlignment

lphy.base.evolution.alignment.lphy.base.evolution.alignment.Alignment

lphy.base.evolution.alignment.lphy.base.evolution.alignment.AlignmentUtils

lphy.base.evolution.alignment.lphy.base.evolution.alignment.CharSetBlock

lphy.base.evolution.alignment.lphy.base.evolution.alignment.ContinuousCharacterData

lphy.base.evolution.alignment.lphy.base.evolution.alignment.ErrorAlignment

lphy.base.evolution.alignment.lphy.base.evolution.alignment.ErrorModel

lphy.base.evolution.alignment.lphy.base.evolution.alignment.FastaAlignment

lphy.base.evolution.alignment.lphy.base.evolution.alignment.MetaDataAlignment

lphy.base.evolution.alignment.lphy.base.evolution.alignment.Sequence

lphy.base.evolution.alignment.lphy.base.evolution.alignment.SimpleAlignment

lphy.base.evolution.alignment.lphy.base.evolution.alignment.TaxaCharacterMatrix

lphy.base.evolution.birthdeath

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.BirthDeathConstants

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.BirthDeathSamplingTree

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.BirthDeathSamplingTreeDT

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.BirthDeathSerialSamplingTree

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.BirthDeathTree

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.BirthDeathTreeDT

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.FossilBirthDeathTree

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.FullBirthDeathTree

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.GLMBirthDeathTree

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.RhoSampleTree

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.SimBDReverse

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.SimFBDAge

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.SimFossilsPoisson

lphy.base.evolution.birthdeath.lphy.base.evolution.birthdeath.Yule

lphy.base.evolution.branchrate

lphy.base.evolution.branchrate.lphy.base.evolution.branchrate.LocalBranchRates

lphy.base.evolution.coalescent

lphy.base.evolution.coalescent.lphy.base.evolution.coalescent.Coalescent

lphy.base.evolution.coalescent.lphy.base.evolution.coalescent.CoalescentConstants

lphy.base.evolution.coalescent.lphy.base.evolution.coalescent.MultispeciesCoalescent

lphy.base.evolution.coalescent.lphy.base.evolution.coalescent.SerialCoalescent

lphy.base.evolution.coalescent.lphy.base.evolution.coalescent.SkylineCoalescent

lphy.base.evolution.coalescent.lphy.base.evolution.coalescent.StructuredCoalescent

lphy.base.evolution.continuous

lphy.base.evolution.continuous.lphy.base.evolution.continuous.PhyloBrownian

lphy.base.evolution.continuous.lphy.base.evolution.continuous.PhyloMultivariateBrownian

lphy.base.evolution.continuous.lphy.base.evolution.continuous.PhyloOU

lphy.base.evolution.datatype

lphy.base.evolution.datatype.lphy.base.evolution.datatype.Binary

lphy.base.evolution.datatype.lphy.base.evolution.datatype.BinaryState

lphy.base.evolution.datatype.lphy.base.evolution.datatype.Continuous

lphy.base.evolution.datatype.lphy.base.evolution.datatype.DataType

lphy.base.evolution.datatype.lphy.base.evolution.datatype.Standard

lphy.base.evolution.datatype.lphy.base.evolution.datatype.StandardState

lphy.base.evolution.datatype.lphy.base.evolution.datatype.package-info

lphy.base.evolution.likelihood

lphy.base.evolution.likelihood.lphy.base.evolution.likelihood.AbstractPhyloCTMC

lphy.base.evolution.likelihood.lphy.base.evolution.likelihood.CTMC

lphy.base.evolution.likelihood.lphy.base.evolution.likelihood.PhyloCTMC

lphy.base.evolution.likelihood.lphy.base.evolution.likelihood.PhyloCTMCSiteModel

lphy.base.evolution.sitemodel

lphy.base.evolution.sitemodel.lphy.base.evolution.sitemodel.SiteModel

lphy.base.evolution.substitutionmodel

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.F81

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.GTR

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.GeneralTimeReversible

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.HKY

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.JukesCantor

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.K80

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.LewisMK

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.RateMatrix

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.TN93

lphy.base.evolution.substitutionmodel.lphy.base.evolution.substitutionmodel.WAG

lphy.base.evolution.tree

lphy.base.evolution.tree.lphy.base.evolution.tree.LTTUtils

lphy.base.evolution.tree.lphy.base.evolution.tree.TaxaConditionedTreeGenerator

lphy.base.evolution.tree.lphy.base.evolution.tree.TimeTree

lphy.base.evolution.tree.lphy.base.evolution.tree.TimeTreeNode

lphy.base.evolution.tree.lphy.base.evolution.tree.TimeTreeNodeVisitor

lphy.base.evolution.tree.lphy.base.evolution.tree.TimeTreeUtils

lphy.base.function

lphy.base.function.lphy.base.function.ARange

lphy.base.function.lphy.base.function.ArgI

lphy.base.function.lphy.base.function.BinaryRateMatrix

lphy.base.function.lphy.base.function.CoalescentCorrection

lphy.base.function.lphy.base.function.Concat2Str

lphy.base.function.lphy.base.function.ConcatArray

lphy.base.function.lphy.base.function.ConcatStr

lphy.base.function.lphy.base.function.Copy

lphy.base.function.lphy.base.function.GeneralLinearFunction

lphy.base.function.lphy.base.function.Get

lphy.base.function.lphy.base.function.IfElse

lphy.base.function.lphy.base.function.Intersect

lphy.base.function.lphy.base.function.Length

lphy.base.function.lphy.base.function.Map

lphy.base.function.lphy.base.function.MigrationMatrix

lphy.base.function.lphy.base.function.ParseInt

lphy.base.function.lphy.base.function.Pow

lphy.base.function.lphy.base.function.Product

lphy.base.function.lphy.base.function.Rep

lphy.base.function.lphy.base.function.RepArray

lphy.base.function.lphy.base.function.Select

lphy.base.function.lphy.base.function.SliceTimeTreeArray

lphy.base.function.lphy.base.function.Sort

lphy.base.function.lphy.base.function.Split

lphy.base.function.lphy.base.function.Sum

lphy.base.function.lphy.base.function.Sum2dArray

lphy.base.function.lphy.base.function.SumBoolean

lphy.base.function.lphy.base.function.SumCols

lphy.base.function.lphy.base.function.SumRows

lphy.base.function.lphy.base.function.SumUtils

lphy.base.function.lphy.base.function.ToDouble

lphy.base.function.lphy.base.function.Unique

lphy.base.function.alignment

lphy.base.function.alignment.lphy.base.function.alignment.CopySites

lphy.base.function.alignment.lphy.base.function.alignment.InvariableSites

lphy.base.function.alignment.lphy.base.function.alignment.MetaDataOptions

lphy.base.function.alignment.lphy.base.function.alignment.MissingSites

lphy.base.function.alignment.lphy.base.function.alignment.NCharFunction

lphy.base.function.alignment.lphy.base.function.alignment.RemoveTaxa

lphy.base.function.alignment.lphy.base.function.alignment.SelectSitesByMissingFraction

lphy.base.function.alignment.lphy.base.function.alignment.VariableSites

lphy.base.function.datatype

lphy.base.function.datatype.lphy.base.function.datatype.AminoAcidsFunction

lphy.base.function.datatype.lphy.base.function.datatype.BinaryDatatypeFunction

lphy.base.function.datatype.lphy.base.function.datatype.NucleotidesFunction

lphy.base.function.datatype.lphy.base.function.datatype.StandardDatatypeFunction

lphy.base.function.io

lphy.base.function.io.lphy.base.function.io.ReadDelim

lphy.base.function.io.lphy.base.function.io.ReadFasta

lphy.base.function.io.lphy.base.function.io.ReadNexus

lphy.base.function.io.lphy.base.function.io.ReadTrees

lphy.base.function.io.lphy.base.function.io.ReaderConst

lphy.base.function.io.lphy.base.function.io.WriteFasta

lphy.base.function.taxa

lphy.base.function.taxa.lphy.base.function.taxa.CreateTaxa

lphy.base.function.taxa.lphy.base.function.taxa.ExtantTaxa

lphy.base.function.taxa.lphy.base.function.taxa.ExtractTrait

lphy.base.function.taxa.lphy.base.function.taxa.NTaxaFunction

lphy.base.function.taxa.lphy.base.function.taxa.SpeciesTaxa

lphy.base.function.taxa.lphy.base.function.taxa.TaxaAgesFromFunction

lphy.base.function.taxa.lphy.base.function.taxa.TaxaFunction

lphy.base.function.tree

lphy.base.function.tree.lphy.base.function.tree.ExtantTree

lphy.base.function.tree.lphy.base.function.tree.MigrationCount

lphy.base.function.tree.lphy.base.function.tree.Newick

lphy.base.function.tree.lphy.base.function.tree.NodeCount

lphy.base.function.tree.lphy.base.function.tree.PruneTree

lphy.base.function.tree.lphy.base.function.tree.TreeLength

lphy.base.logger

lphy.base.logger.lphy.base.logger.NexusAlignmentFormatter

lphy.base.logger.lphy.base.logger.NexusTreeFormatter

lphy.base.math

lphy.base.math.lphy.base.math.MathUtils

lphy.base.parser

lphy.base.parser.lphy.base.parser.NexusParser

lphy.base.parser.newick

lphy.base.parser.newick.lphy.base.parser.newick.NewickASTVisitor

lphy.base.parser.newick.lphy.base.parser.newick.NewickLexer.g4

lphy.base.parser.newick.lphy.base.parser.newick.NewickLexer.interp

lphy.base.parser.newick.lphy.base.parser.newick.NewickLexer

lphy.base.parser.newick.lphy.base.parser.newick.NewickLexer.tokens

lphy.base.parser.newick.lphy.base.parser.newick.NewickParser.g4

lphy.base.parser.newick.lphy.base.parser.newick.NewickParser.interp

lphy.base.parser.newick.lphy.base.parser.newick.NewickParser

lphy.base.parser.newick.lphy.base.parser.newick.NewickParser.tokens

lphy.base.parser.newick.lphy.base.parser.newick.NewickParserBaseListener

lphy.base.parser.newick.lphy.base.parser.newick.NewickParserBaseVisitor

lphy.base.parser.newick.lphy.base.parser.newick.NewickParserListener

lphy.base.parser.newick.lphy.base.parser.newick.NewickParserVisitor

lphy.base.parser.newick.lphy.base.parser.newick.TreeParsingException

lphy.base.parser.nexus

lphy.base.parser.nexus.lphy.base.parser.nexus.CharactersBlock

lphy.base.parser.nexus.lphy.base.parser.nexus.NexusBlock

lphy.base.parser.nexus.lphy.base.parser.nexus.NexusBuilder

lphy.base.parser.nexus.lphy.base.parser.nexus.NexusUtils

lphy.base.parser.nexus.lphy.base.parser.nexus.NexusWriter

lphy.base.parser.nexus.lphy.base.parser.nexus.TaxaBlock

lphy.base.parser.nexus.lphy.base.parser.nexus.TreesBlock

lphy.base.parser

lphy.base.parser.lphy.base.parser.package-info

lphy.base.spi

lphy.base.spi.lphy.base.spi.LPhyBaseImpl

lphy.base.spi.lphy.base.spi.SequenceTypeBaseImpl

lphy.base.spi.lphy.base.spi.SequenceTypeExtension

lphy.base.spi.lphy.base.spi.ValueFormatterBaseImpl

.module-info