Download gatk JAR 4.1.8.1 with all dependencies
Development on GATK 4
Files of the artifact gatk version 4.1.8.1 from the group org.broadinstitute.
Artifact gatk
Group org.broadinstitute
Version 4.1.8.1
Last update 20. July 2020
Tags: development gatk
Organization not specified
URL http://github.com/broadinstitute/gatk
License Apache 2.0
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!
Group org.broadinstitute
Version 4.1.8.1
Last update 20. July 2020
Tags: development gatk
Organization not specified
URL http://github.com/broadinstitute/gatk
License Apache 2.0
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!
There is a newer version: 4.6.0.0
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Source code of gatk version 4.1.8.1
META-INF
htsjdk.samtools
large.cnn_score_variants
large
org.broadinstitute.hellbender
org.broadinstitute.hellbender.cmdline
org.broadinstitute.hellbender.cmdline.GATKPlugin
org.broadinstitute.hellbender.cmdline
org.broadinstitute.hellbender.cmdline.org.broadinstitute.hellbender.cmdline.PicardCommandLineProgram
org.broadinstitute.hellbender.cmdline.argumentcollections
org.broadinstitute.hellbender.cmdline.programgroups
org.broadinstitute.hellbender.engine
org.broadinstitute.hellbender.engine.filters
org.broadinstitute.hellbender.engine.filters.org.broadinstitute.hellbender.engine.filters.ReadFilter
org.broadinstitute.hellbender.engine.spark
org.broadinstitute.hellbender.engine.spark.datasources
org.broadinstitute.hellbender.exceptions
org.broadinstitute.hellbender.metrics
org.broadinstitute.hellbender.metrics.analysis
org.broadinstitute.hellbender.metrics
org.broadinstitute.hellbender.testutils
org.broadinstitute.hellbender.tools
org.broadinstitute.hellbender.tools.org.broadinstitute.hellbender.tools.AnalyzeSaturationMutagenesis
org.broadinstitute.hellbender.tools.org.broadinstitute.hellbender.tools.DownsampleableSparkReadShard
org.broadinstitute.hellbender.tools.copynumber
org.broadinstitute.hellbender.tools.copynumber.arguments
org.broadinstitute.hellbender.tools.copynumber.caller
org.broadinstitute.hellbender.tools.copynumber
org.broadinstitute.hellbender.tools.copynumber.datacollection
org.broadinstitute.hellbender.tools.copynumber.denoising
org.broadinstitute.hellbender.tools.copynumber.formats
org.broadinstitute.hellbender.tools.copynumber.formats.collections
org.broadinstitute.hellbender.tools.copynumber.formats.metadata
org.broadinstitute.hellbender.tools.copynumber.formats.records
org.broadinstitute.hellbender.tools.copynumber.formats.records.annotation
org.broadinstitute.hellbender.tools.copynumber.gcnv
org.broadinstitute.hellbender.tools.copynumber.models
org.broadinstitute.hellbender.tools.copynumber.plotting
org.broadinstitute.hellbender.tools.copynumber
org.broadinstitute.hellbender.tools.copynumber.segmentation
org.broadinstitute.hellbender.tools.copynumber.utils
org.broadinstitute.hellbender.tools.copynumber.utils.annotatedinterval
org.broadinstitute.hellbender.tools.copynumber.utils.germlinetagging
org.broadinstitute.hellbender.tools.copynumber.utils.optimization
org.broadinstitute.hellbender.tools.copynumber.utils.segmentation
org.broadinstitute.hellbender.tools.examples
org.broadinstitute.hellbender.tools.examples.metrics.multi
org.broadinstitute.hellbender.tools.examples.metrics.single
org.broadinstitute.hellbender.tools.funcotator
org.broadinstitute.hellbender.tools.funcotator.compositeoutput
org.broadinstitute.hellbender.tools.funcotator.dataSources
org.broadinstitute.hellbender.tools.funcotator.dataSources.cosmic
org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode
org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.segment
org.broadinstitute.hellbender.tools.funcotator.dataSources.vcf
org.broadinstitute.hellbender.tools.funcotator.dataSources.xsv
org.broadinstitute.hellbender.tools.funcotator.filtrationRules
org.broadinstitute.hellbender.tools.funcotator
org.broadinstitute.hellbender.tools.funcotator.genelistoutput
org.broadinstitute.hellbender.tools.funcotator.mafOutput
org.broadinstitute.hellbender.tools.funcotator.metadata
org.broadinstitute.hellbender.tools.funcotator
org.broadinstitute.hellbender.tools.funcotator.simpletsvoutput
org.broadinstitute.hellbender.tools.funcotator.vcfOutput
org.broadinstitute.hellbender.tools.genomicsdb
org.broadinstitute.hellbender.tools.htsgetreader
org.broadinstitute.hellbender.tools.readersplitters
org.broadinstitute.hellbender.tools.spark
org.broadinstitute.hellbender.tools.spark.bwa
org.broadinstitute.hellbender.tools.spark.bwa.org.broadinstitute.hellbender.tools.spark.bwa.BwaSpark
org.broadinstitute.hellbender.tools.spark.pathseq
org.broadinstitute.hellbender.tools.spark.pathseq.loggers
org.broadinstitute.hellbender.tools.spark.pipelines
org.broadinstitute.hellbender.tools.spark.pipelines.metrics
org.broadinstitute.hellbender.tools.spark.sv
org.broadinstitute.hellbender.tools.spark.sv.discovery
org.broadinstitute.hellbender.tools.spark.sv.discovery.alignment
org.broadinstitute.hellbender.tools.spark.sv.discovery.inference
org.broadinstitute.hellbender.tools.spark.sv.evidence
org.broadinstitute.hellbender.tools.spark.sv.utils
org.broadinstitute.hellbender.tools.spark.transforms
org.broadinstitute.hellbender.tools.spark.transforms.markduplicates
org.broadinstitute.hellbender.tools.spark.utils
org.broadinstitute.hellbender.tools.spark.validation
org.broadinstitute.hellbender.tools.validation
org.broadinstitute.hellbender.tools.walkers
org.broadinstitute.hellbender.tools.walkers.org.broadinstitute.hellbender.tools.walkers.CombineGVCFs
org.broadinstitute.hellbender.tools.walkers.annotator
org.broadinstitute.hellbender.tools.walkers.annotator.allelespecific
org.broadinstitute.hellbender.tools.walkers.bqsr
org.broadinstitute.hellbender.tools.walkers.consensus
org.broadinstitute.hellbender.tools.walkers.contamination
org.broadinstitute.hellbender.tools.walkers.coverage
org.broadinstitute.hellbender.tools.walkers.fasta
org.broadinstitute.hellbender.tools.walkers.filters
org.broadinstitute.hellbender.tools.walkers.genotyper
org.broadinstitute.hellbender.tools.walkers.genotyper.afcalc
org.broadinstitute.hellbender.tools.walkers.gnarlyGenotyper
org.broadinstitute.hellbender.tools.walkers.haplotypecaller
org.broadinstitute.hellbender.tools.walkers.haplotypecaller.graphs
org.broadinstitute.hellbender.tools.walkers.haplotypecaller.readthreading
org.broadinstitute.hellbender.tools.walkers.mutect
org.broadinstitute.hellbender.tools.walkers.mutect.clustering
org.broadinstitute.hellbender.tools.walkers.mutect.filtering
org.broadinstitute.hellbender.tools.walkers.qc
org.broadinstitute.hellbender.tools.walkers.qc.org.broadinstitute.hellbender.tools.walkers.qc.Pileup
org.broadinstitute.hellbender.tools.walkers.readorientation
org.broadinstitute.hellbender.tools.walkers.realignmentfilter
org.broadinstitute.hellbender.tools.walkers.rnaseq
org.broadinstitute.hellbender.tools.walkers.sv
org.broadinstitute.hellbender.tools.walkers.validation
org.broadinstitute.hellbender.tools.walkers.validation.basicshortmutpileup
org.broadinstitute.hellbender.tools.walkers.varianteval
org.broadinstitute.hellbender.tools.walkers.varianteval.evaluators
org.broadinstitute.hellbender.tools.walkers.varianteval
org.broadinstitute.hellbender.tools.walkers.varianteval.stratifications
org.broadinstitute.hellbender.tools.walkers.varianteval.stratifications.manager
org.broadinstitute.hellbender.tools.walkers.varianteval.util
org.broadinstitute.hellbender.tools.walkers.variantutils
org.broadinstitute.hellbender.tools.walkers.vqsr
org.broadinstitute.hellbender.transformers
org.broadinstitute.hellbender.utils
org.broadinstitute.hellbender.utils.R
org.broadinstitute.hellbender.utils.R.org.broadinstitute.hellbender.utils.R.RScriptExecutorException
org.broadinstitute.hellbender.utils
org.broadinstitute.hellbender.utils.activityprofile
org.broadinstitute.hellbender.utils.baq
org.broadinstitute.hellbender.utils.bwa
org.broadinstitute.hellbender.utils.bwa.org.broadinstitute.hellbender.utils.bwa.BwaMemAlignmentUtils
org.broadinstitute.hellbender.utils.clipping
org.broadinstitute.hellbender.utils.clipping.org.broadinstitute.hellbender.utils.clipping.ClippingOp
org.broadinstitute.hellbender.utils.codecs
org.broadinstitute.hellbender.utils.codecs.copynumber
org.broadinstitute.hellbender.utils.codecs.gtf
org.broadinstitute.hellbender.utils.codecs.refseq
org.broadinstitute.hellbender.utils.codecs.sampileup
org.broadinstitute.hellbender.utils.codecs.table
org.broadinstitute.hellbender.utils.codecs.xsvLocatableTable
org.broadinstitute.hellbender.utils.collections
org.broadinstitute.hellbender.utils.config
org.broadinstitute.hellbender.utils.config.org.broadinstitute.hellbender.utils.config.SystemProperty
org.broadinstitute.hellbender.utils.downsampling
org.broadinstitute.hellbender.utils.fasta
org.broadinstitute.hellbender.utils.fragments
org.broadinstitute.hellbender.utils.functional
org.broadinstitute.hellbender.utils.gcs
org.broadinstitute.hellbender.utils.genotyper
org.broadinstitute.hellbender.utils.haplotype
org.broadinstitute.hellbender.utils.haplotype.org.broadinstitute.hellbender.utils.haplotype.EventMap
org.broadinstitute.hellbender.utils.help
org.broadinstitute.hellbender.utils.helpTemplates
org.broadinstitute.hellbender.utils.illumina
org.broadinstitute.hellbender.utils.io
org.broadinstitute.hellbender.utils.iterators
org.broadinstitute.hellbender.utils.locusiterator
org.broadinstitute.hellbender.utils.logging
org.broadinstitute.hellbender.utils.mcmc
org.broadinstitute.hellbender.utils.mcmc.org.broadinstitute.hellbender.utils.mcmc.ParameterizedModel
org.broadinstitute.hellbender.utils.mcmc.org.broadinstitute.hellbender.utils.mcmc.ParameterizedState
org.broadinstitute.hellbender.utils.nio
org.broadinstitute.hellbender.utils.pairhmm
org.broadinstitute.hellbender.utils.pairhmm.org.broadinstitute.hellbender.utils.pairhmm.Log10PairHMM
org.broadinstitute.hellbender.utils.pairhmm.org.broadinstitute.hellbender.utils.pairhmm.PairHMMModel
org.broadinstitute.hellbender.utils.param
org.broadinstitute.hellbender.utils.pileup
org.broadinstitute.hellbender.utils.python
org.broadinstitute.hellbender.utils.read
org.broadinstitute.hellbender.utils.read.markduplicates
org.broadinstitute.hellbender.utils.read.markduplicates.sparkrecords
org.broadinstitute.hellbender.utils.read.mergealignment
org.broadinstitute.hellbender.utils.recalibration
org.broadinstitute.hellbender.utils.recalibration.covariates
org.broadinstitute.hellbender.utils.reference
org.broadinstitute.hellbender.utils.report
org.broadinstitute.hellbender.utils.runtime
org.broadinstitute.hellbender.utils.runtime.org.broadinstitute.hellbender.utils.runtime.RuntimeUtils
org.broadinstitute.hellbender.utils.runtime.org.broadinstitute.hellbender.utils.runtime.StreamOutput
org.broadinstitute.hellbender.utils.samples
org.broadinstitute.hellbender.utils.smithwaterman
org.broadinstitute.hellbender.utils.solver
org.broadinstitute.hellbender.utils.spark
org.broadinstitute.hellbender.utils.svd
org.broadinstitute.hellbender.utils.text
org.broadinstitute.hellbender.utils.tsv
org.broadinstitute.hellbender.utils.variant
org.broadinstitute.hellbender.utils.variant.writers
org.broadinstitute.hellbender.utils.wdlTemplates
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