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This is the brand new, re-written from scratch plugin for ANTLR v3. Previous valiant efforts all suffered from being unable to modify the ANTLR Tool itself to provide support not just for Maven oriented things but any other tool that might wish to invoke ANTLR without resorting to the command line interface. Rather than try to shoe-horn new code into the existing Mojo (in fact I think that by incorporating a patch supplied by someone I ended up with tow versions of the Mojo, I elected to rewrite everything from scratch, including the documentation, so that we might end up with a perfect Mojo that can do everything that ANTLR v3 supports such as imported grammar processing, proper support for library directories and locating token files from generated sources, and so on. In the end I decided to also change the the ANTLR Tool.java code so that it would be the provider of all the things that a build tool needs, rather than delegating things to 5 different tools. So, things like dependencies, dependency sorting, option tracking, generating sources and so on are all folded back in to ANTLR's Tool.java code, where they belong, and they now provide a public interface to anyone that might want to interface with them. One other goal of this rewrite was to completely document the whole thing to death. Hence even this pom has more comments than funcitonal elements, in case I get run over by a bus or fall off a cliff while skiing. Jim Idle - March 2009

JUNG the Java Universal Network/Graph Framework--is a software library that provides a common and extensible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. It is written in Java, which allows JUNG-based applications to make use of the extensive built-in capabilities of the Java API, as well as those of other existing third-party Java libraries. The JUNG architecture is designed to support a variety of representations of entities and their relations, such as directed and undirected graphs, multi-modal graphs, graphs with parallel edges, and hypergraphs. It provides a mechanism for annotating graphs, entities, and relations with metadata. This facilitates the creation of analytic tools for complex data sets that can examine the relations between entities as well as the metadata attached to each entity and relation. The current distribution of JUNG includes implementations of a number of algorithms from graph theory, data mining, and social network analysis, such as routines for clustering, decomposition, optimization, random graph generation, statistical analysis, and calculation of network distances, flows, and importance measures (centrality, PageRank, HITS, etc.). JUNG also provides a visualization framework that makes it easy to construct tools for the interactive exploration of network data. Users can use one of the layout algorithms provided, or use the framework to create their own custom layouts. In addition, filtering mechanisms are provided which allow users to focus their attention, or their algorithms, on specific portions of the graph.

JUNG the Java Universal Network/Graph Framework--is a software library that provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. It is written in Java, which allows JUNG-based applications to make use of the extensive built-in capabilities of the Java API, as well as those of other existing third-party Java libraries. The JUNG architecture is designed to support a variety of representations of entities and their relations, such as directed and undirected graphs, multi-modal graphs, graphs with parallel edges, and hypergraphs. It provides a mechanism for annotating graphs, entities, and relations with metadata. This facilitates the creation of analytic tools for complex data sets that can examine the relations between entities as well as the metadata attached to each entity and relation. The current distribution of JUNG includes implementations of a number of algorithms from graph theory, data mining, and social network analysis, such as routines for clustering, decomposition, optimization, random graph generation, statistical analysis, and calculation of network distances, flows, and importance measures (centrality, PageRank, HITS, etc.). JUNG also provides a visualization framework that makes it easy to construct tools for the interactive exploration of network data. Users can use one of the layout algorithms provided, or use the framework to create their own custom layouts. In addition, filtering mechanisms are provided which allow users to focus their attention, or their algorithms, on specific portions of the graph.

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.

A platform for discovery and communication between various parts of a distributed service or application. At its minimum, the platform is a library which can be used to serialize and deserialize application constructs into payloads which it can then send to and receive from remote endpoints. For now it supports TCP and HTTP communication protocols with WebSockets coming soon. It supports raw byte streams via TCP, as well as application/json via JAX-RS as serialization protocols. It offers plain or SSL/TLS communication for security of your data in transit. For now it is only available in Java, with bindings for other languages coming soon. The communication pattern is request-reply, with fail fast semantics, and with service consumers (clients) knowing beforehand the coordinates of the service providers (servers). The TCP communication protocol offers blocking/unblocking/asynchronous flavors whereas the rest are only blocking for now. Coming soon, the platform will provide a Discovery Service to facilitate the registration of the service providers (servers) and service consumers (clients). In this case, the callers don't need to resolve or even balance their calls towards various endpoints, since the Platform handles this tasks. In this case, the pub/sub communication pattern will also be available (coming soon) with at-most-once delivery guarantees. We intend to provide a Security Service for managing the keys/and certificates of various services as well as Metrics and Logging services (coming soon).