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A platform for discovery and communication between various parts of a distributed service or application. At its minimum, the platform is a library which can be used to serialize and deserialize application constructs into payloads which it can then send to and receive from remote endpoints. For now it supports TCP and HTTP communication protocols with WebSockets coming soon. It supports raw byte streams via TCP, as well as application/json via JAX-RS as serialization protocols. It offers plain or SSL/TLS communication for security of your data in transit. For now it is only available in Java, with bindings for other languages coming soon. The communication pattern is request-reply, with fail fast semantics, and with service consumers (clients) knowing beforehand the coordinates of the service providers (servers). The TCP communication protocol offers blocking/unblocking/asynchronous flavors whereas the rest are only blocking for now. Coming soon, the platform will provide a Discovery Service to facilitate the registration of the service providers (servers) and service consumers (clients). In this case, the callers don't need to resolve or even balance their calls towards various endpoints, since the Platform handles this tasks. In this case, the pub/sub communication pattern will also be available (coming soon) with at-most-once delivery guarantees. We intend to provide a Security Service for managing the keys/and certificates of various services as well as Metrics and Logging services (coming soon).

Rouplex-Niossl is a java SPI (service provider interface) for secure (SSL/TLS), selectable, socket channels. Some of the classes in the java.nio.channels package have been extended by secure counterparts that can be used side by side, or replace existing instances of the plain implementations. This package contains just the entry point calls for instantiating such instances, as well as a non-functional, default implementation. For a concrete implementation of these classes you can take a look at Rouplex-Niossl-Spi, which would be included as a separate dependency to your applications. More specifically this library defines SSLSocketChannel class to inherit from SocketChannel, SSLServerSocketChannel to inherit from ServerSocketChannel and SSLSelector to inherit from SSLSelector. One or more instances of SSLSocketChannel can be registered with an (or more) instance of SSLSelector to be selected upon, with the same exact semantics a SocketChannel would expect from registering with a Selector. Further, a mixture of SocketChannels and SSLSocketChannels can be registered simultaneously with an SSLSelector. The secure counterparts abide to the same API and semantics defined for plain channels at https://docs.oracle.com/javase/8/docs/api/java/nio/channels/package-summary.html. This way, the existing products can be easily updated to provide secure communication and new products can achieve security of data in transit by using the already proven and excellent patterns for communication such as nio.

Rouplex-Niossl is a java SPI (service provider interface) for secure (SSL/TLS), selectable, socket channels. Some of the classes in the java.nio.channels package have been extended by secure counterparts that can be used side by side, or replace existing instances of the plain implementations. This package contains just the entry point calls for instantiating such instances, as well as a non-functional, default implementation. For a concrete implementation of these classes you can take a look at Rouplex-Niossl-Spi, which would be included as a separate dependency to your applications. More specifically this library defines SSLSocketChannel class to inherit from SocketChannel, SSLServerSocketChannel to inherit from ServerSocketChannel and SSLSelector to inherit from SSLSelector. One or more instances of SSLSocketChannel can be registered with an (or more) instance of SSLSelector to be selected upon, with the same exact semantics a SocketChannel would expect from registering with a Selector. Further, a mixture of SocketChannels and SSLSocketChannels can be registered simultaneously with an SSLSelector. The secure counterparts abide to the same API and semantics defined for plain channels at https://docs.oracle.com/javase/8/docs/api/java/nio/channels/package-summary.html. This way, the existing products can be easily updated to provide secure communication and new products can achieve security of data in transit by using the already proven and excellent patterns for communication such as nio.

This package currently contains classes for training multilayer perceptrons with one hidden layer, where the number of hidden units is user specified. MLPClassifier can be used for classification problems and MLPRegressor is the corresponding class for numeric prediction tasks. The former has as many output units as there are classes, the latter only one output unit. Both minimise a penalised squared error with a quadratic penalty on the (non-bias) weights, i.e., they implement "weight decay", where this penalised error is averaged over all training instances. The size of the penalty can be determined by the user by modifying the "ridge" parameter to control overfitting. The sum of squared weights is multiplied by this parameter before added to the squared error. Both classes use BFGS optimisation by default to find parameters that correspond to a local minimum of the error function. but optionally conjugated gradient descent is available, which can be faster for problems with many parameters. Logistic functions are used as the activation functions for all units apart from the output unit in MLPRegressor, which employs the identity function. Input attributes are standardised to zero mean and unit variance. MLPRegressor also rescales the target attribute (i.e., "class") using standardisation. All network parameters are initialised with small normally distributed random values.

JUNG the Java Universal Network/Graph Framework--is a software library that provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. It is written in Java, which allows JUNG-based applications to make use of the extensive built-in capabilities of the Java API, as well as those of other existing third-party Java libraries. The JUNG architecture is designed to support a variety of representations of entities and their relations, such as directed and undirected graphs, multi-modal graphs, graphs with parallel edges, and hypergraphs. It provides a mechanism for annotating graphs, entities, and relations with metadata. This facilitates the creation of analytic tools for complex data sets that can examine the relations between entities as well as the metadata attached to each entity and relation. The current distribution of JUNG includes implementations of a number of algorithms from graph theory, data mining, and social network analysis, such as routines for clustering, decomposition, optimization, random graph generation, statistical analysis, and calculation of network distances, flows, and importance measures (centrality, PageRank, HITS, etc.). JUNG also provides a visualization framework that makes it easy to construct tools for the interactive exploration of network data. Users can use one of the layout algorithms provided, or use the framework to create their own custom layouts. In addition, filtering mechanisms are provided which allow users to focus their attention, or their algorithms, on specific portions of the graph.

git-commit-id-plugin is a plugin quite similar to https://fisheye.codehaus.org/browse/mojo/tags/buildnumber-maven-plugin-1.0-beta-4 for example but as buildnumber only supports svn (which is very sad) and cvs (which is even more sad). This plugin makes basic repository information available through maven resources. This can be used to display "what version is this?" or "who has deployed this and when, from which branch?" information at runtime - making it easy to find things like "oh, that isn't deployed yet, I'll test it tomorrow" and making both testers and developers life easier. The data currently exported is like this (that's the end effect from the GitRepositoryState Bean): { "branch" : "testing-maven-git-plugin", "commitTime" : "06.01.1970 @ 16:16:26 CET", "commitId" : "787e39f61f99110e74deed68ab9093088d64b969", "commitUserName" : "Konrad Malawski", "commitUserEmail" : "[email protected]", "commitMessageFull" : "releasing my fun plugin :-) + fixed some typos + cleaned up directory structure + added license etc", "commitMessageShort" : "releasing my fun plugin :-)", "buildTime" : "06.01.1970 @ 16:17:53 CET", "buildUserName" : "Konrad Malawski", "buildUserEmail" : "[email protected]" } Note that the data is exported via maven resource filtering and is really easy to use with spring - which I've explained in detail in this readme https://github.com/ktoso/maven-git-commit-id-plugin

Includes 2 main parts: - Path finding through 2D polygons using the A star algorithm and navigation-mesh generation Field of vision / shadows / line of sight / lighting. The basic polygon and point classes are the KPolygon and KPoint. KPolygon contains a list of KPoints for vertices as well as a center (centroid), area, and radius (circular bound or distance from center to furthest point). KPolygon was born out of the need for a more game-oriented and flexible polygon class than the Path2D class in the standard Java library. KPolygon implements java.awt.geom.Shape so it can be easily drawn and filled by Java2D's Graphics2D object. - This API provides path-finding and field-of-vision. For other complex geometric operations such as buffering (fattening and shrinking) and constructive area geometry (intersections and unions) it is recommended to use the excellent Java Topology Suite (JTS). The standard Java2D library also provides the Area class which can be used for some constructive area geometry operations. Note that there is a utility class PolygonConverter that can quickly convert KPolygons to JTS polygons and vice versa.

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.